BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3403.p (405 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094168|ref|YP_001099243.1| putative secretion protein [Her... 206 2e-54 gi|134094274|ref|YP_001099349.1| hypothetical protein HEAR1042 [... 64 2e-11 gi|134093331|ref|YP_001098406.1| hypothetical protein HEAR0041 [... 58 1e-09 gi|134093785|ref|YP_001098860.1| cobalt-zinc-cadmium resistance ... 57 1e-09 >gi|134094168|ref|YP_001099243.1| putative secretion protein [Herminiimonas arsenicoxydans] Length = 481 Score = 206 bits (524), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 135/372 (36%), Positives = 200/372 (53%), Gaps = 19/372 (5%) Query: 36 GGYWLYSRQQPVPPAAKPIPVKLETVT-VERADLEQVVNATGNVVAQDYVDVGSKVAGQI 94 G YW + + AK P ++ V V+R D++ +V ATG V +YVDVG++V+GQ+ Sbjct: 34 GAYWGWHKFY-----AKKDPREIYQVAEVQRGDIQDLVTATGTVQPLEYVDVGAQVSGQL 88 Query: 95 SDVDVVIGETVKAGRLLATVAPAVQSSRIESNRATLARLKAELAGQNAQLDFAQLQFQRQ 154 + + +G VK G LLA + P V + +++ RA L +A + + + L A LQ+ RQ Sbjct: 89 KKLHIEVGSVVKEGDLLAEIDPTVFRATVDARRAGLRNQQATMKERESALALASLQYTRQ 148 Query: 155 TQLKAENATREESYESSRMNMAAAASRVDATNAQIQQTEAAIREDEAVQKQTRIEAPANG 214 L A +AT E+ + + + AA +++DA AQI+QT++ +R DEA +I AP G Sbjct: 149 KNLMAADATTAETLQIAEATLRAAKAQIDALQAQIEQTQSTLRADEANLNYAKIYAPMTG 208 Query: 215 TIVTLNARPGQMVGANQE--VLMRIADLSRMTVQVPVAEEDVTRLQKGMTAYFTTPGYPG 272 T+V+L AR GQ + ANQ ++RIADLS MTVQ V+E ++ +L K M YFTT G G Sbjct: 209 TVVSLTARQGQTLNANQNAPTILRIADLSTMTVQTQVSEAEIGKLSKNMEVYFTTLGSQG 268 Query: 273 KRWSGKLRQIMLLPTDDSGRQGKKAYYTVLFDVANPSRELMSGMSADVYFVLARAEHVPT 332 +RW G LR+I PT + Y LFDV N ++ LM M+ V+F+ A A+ V Sbjct: 269 RRWYGALRKIEPTPTVTN----NVVLYNALFDVPNNNQALMPNMTTQVFFIAATAKDVLL 324 Query: 333 IPRTLVTKPGMDGTQTVKVVLADGTLESRKIKIGIRDGERAQVLSGLKEGEQVLLPANPP 392 +P + VT G+ K D +S K D +A K+G A+ Sbjct: 325 VPTSAVTTTRGSGSAGGKRERGDSAGKSAGEKSSASDNRKA------KDGGAKPAAADKS 378 Query: 393 QPEGA-GNAGAP 403 P A N G+P Sbjct: 379 DPSAATSNTGSP 390 >gi|134094274|ref|YP_001099349.1| hypothetical protein HEAR1042 [Herminiimonas arsenicoxydans] Length = 382 Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 79/320 (24%), Positives = 141/320 (44%), Gaps = 32/320 (10%) Query: 74 ATGNVVAQDYVDVGSKVAGQISDVDVVIGETVKAGRLLATVAPAVQSSRIESNRATLARL 133 A G V A + VDV KV + + V G+ VKAG+LL T+ S+++ +A+ Sbjct: 57 ANGYVTAINTVDVRPKVQNIVRTIHVREGQFVKAGQLLFTLDE-------RSDQSNVAKA 109 Query: 134 KAELAGQNAQLDFAQLQFQRQTQLKAENATREESYESSRMNMAAAASRVDATNAQIQQTE 193 +AELA + L A+L +R L + N + +++R +AA + A A + + Sbjct: 110 QAELAAGQSDLADAELALKRNEDLLSRNFVSQAVVDTARNKVAALRNTSKANRAIAESSN 169 Query: 194 AAIREDEAVQKQTRIEAPANGTIVTLNARPGQMVGANQEVLMRIADLSRMTVQVPVAEED 253 + ++ RI A +G I ++ PG + + + ++ I+ L + V + E + Sbjct: 170 ITLSDN-------RIAASISGRIGIISVHPGSLAQPSGDPMVTISQLDPIAVSFTLPERE 222 Query: 254 VTRL-----QKGMTAYFTTPGYPGKRWSGKLRQIMLLPTDDSGRQGKKAYYTVLFDVANP 308 + + Q PG P +GKL I SG KA + N Sbjct: 223 LANITATYPQGNAPVTARLPGQP--EMTGKLIFIDNAADTQSGTIRMKAQFD------NA 274 Query: 309 SRELMSGMSADVYFVLARAEHVPTIPRTLVTKPGMDGTQTVKVVLADGTLESRKIK-IGI 367 +++L G +V V H +P V +D + + VV D T++ +K+ + I Sbjct: 275 AQKLWPGSFVNVSLVSRNVSHAVLVPAQAVVTGPID--KFIYVVQPDATVKEQKVDVVAI 332 Query: 368 RDGERAQVLSGLKEGEQVLL 387 +G+ A + GL G +V++ Sbjct: 333 EEGQAAVI--GLDAGARVVV 350 >gi|134093331|ref|YP_001098406.1| hypothetical protein HEAR0041 [Herminiimonas arsenicoxydans] Length = 383 Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 91/334 (27%), Positives = 145/334 (43%), Gaps = 42/334 (12%) Query: 49 PAAKPIPVKLETVTVERADLEQVVNATGNVVAQDYVDVGSKVAG-QISDVDVVIGETVKA 107 PA +P+KL +A G++ A +GS+ G Q++DV V +G+ V+ Sbjct: 53 PAQAQLPIKL--------------SANGSITAWQEAIIGSESNGLQLTDVRVNVGDVVRR 98 Query: 108 GRLLATVAPAVQSSRIESNRATLARLKAELAGQNAQLDFAQLQFQRQTQLKAENATREES 167 G++LAT + A S +A LA+ +A + A A+ +R L+ A Sbjct: 99 GQVLATFSSA-------STKADLAQARASVMEAEANAADAKNNAERARTLENTGA----- 146 Query: 168 YESSRMNMAAAASRVDATNAQIQQTEAAIREDEAVQKQTRIEAPANGTIVTLNARPGQMV 227 + ++N + A + ++E QT++ A NG I NA G +V Sbjct: 147 LSTQQINQYLTTEQTARAKAAAAKAMLTVQEVRLA--QTQVLASDNGIISARNATVGAVV 204 Query: 228 GANQEVLMRIADLSRMTVQVPVAEEDVTRLQKGMTAYFTTPGYPGKRWSGKLRQIMLLPT 287 GA E L R+ R+ + V ++ RL G A T G + GK+R M+ PT Sbjct: 205 GAGTE-LFRLIRQGRLEWRAEVTSAELGRLATGTPALITAAN--GTQVKGKVR--MIAPT 259 Query: 288 DDSGRQGKKAYYTVLFDVAN--PSRELMSGMSADVYFVLARAEHVPTIPRTLVTKPGMDG 345 D+ + Y +L AN P R +GM A F L + V + +V + DG Sbjct: 260 VDAQNRSALVYVDLLPAAANVAPVR---AGMFATGEFDLGMSTAVTVPQQAIVIR---DG 313 Query: 346 TQTVKVVLADGTLESRKIKIGIRDGERAQVLSGL 379 V + AD + KI+ G R +R +VL G+ Sbjct: 314 FSYVFRLNADHRVTQLKIEPGRRLQDRIEVLKGI 347 >gi|134093785|ref|YP_001098860.1| cobalt-zinc-cadmium resistance protein CzcB [Herminiimonas arsenicoxydans] Length = 526 Score = 57.4 bits (137), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 73/301 (24%), Positives = 132/301 (43%), Gaps = 34/301 (11%) Query: 84 VDVGSKVAGQISDVDVVIGETVKAGRLLATVAPAVQSSRIESNRATLARLKAELAGQNAQ 143 V V ++AG + V G+ VK G++LA ++ +L+ ++EL + Sbjct: 228 VHVVPRLAGIVDSVRANAGDQVKKGQVLAVISSQ-----------SLSDQRSELLAAQKR 276 Query: 144 LDFAQLQFQRQTQLKAENATREESYESSRMNMAAAASRVDATNAQIQQTEAAIREDEAVQ 203 L A+ ++R+ L E + E+ Y +R M A ++ A +AQ + + Sbjct: 277 LSLARTTYEREKSLWEEKISAEQDYLQARAAMQEA--QIMAQSAQQKLAALGASPSSSNL 334 Query: 204 KQTRIEAPANGTIVTLNARPGQMVGANQEVLMRIADLSRMTVQVPVAEEDVTRLQKGMTA 263 Q I +P +G I N G + + + + ++DLS + V + V ED+ L+ G Sbjct: 335 TQYEIRSPIDGVITDKNISTGSVTKEDANIFV-VSDLSTVWVDLTVRAEDIGALKVGQKG 393 Query: 264 YFTTPGYPGKRWSGKLRQIMLLPTDDSGRQGKKAYYTVLFDVANPSRELMSGMSADVYFV 323 + + G+ G + I L G Q + A ++ +ANP G+ +V V Sbjct: 394 TVKSSAFDGQD-VGAVSYIGAL----VGEQTRTAKARIV--LANPKGLWRPGLPVNVNLV 446 Query: 324 LARAEHVPTIPRTLVTKPGMDGTQTV---KVVLA--DGTLESRKIKIGIRDGERAQVLSG 378 + +P + +D QT+ +VV LE+R +++G DG+ +VLSG Sbjct: 447 AGEVD----VPVAI----SVDSIQTLGDREVVFGRYGNLLEARPLELGRSDGKLIEVLSG 498 Query: 379 L 379 L Sbjct: 499 L 499 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.129 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 673,548 Number of extensions: 25054 Number of successful extensions: 98 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 96 Number of HSP's successfully gapped: 9 Length of query: 405 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 321 Effective length of database: 723,567 Effective search space: 232265007 Effective search space used: 232265007 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 130 (54.7 bits)