BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3402.p (496 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094170|ref|YP_001099245.1| putative outer membrane protein... 302 2e-83 gi|134095560|ref|YP_001100635.1| outer membrane transport protei... 221 5e-59 gi|134095881|ref|YP_001100956.1| outer membrane transport protei... 187 9e-49 gi|134095761|ref|YP_001100836.1| putative outer membrane transpo... 181 6e-47 gi|134095533|ref|YP_001100608.1| putative RND efflux system, out... 166 3e-42 >gi|134094170|ref|YP_001099245.1| putative outer membrane protein [Herminiimonas arsenicoxydans] Length = 469 Score = 302 bits (774), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 197/469 (42%), Positives = 284/469 (60%), Gaps = 14/469 (2%) Query: 22 RPTRLTLAVTLVLTVAGCVTREVQTDPILEMQVPDKWGGGASADVAHAEQLWPDTDWWKQ 81 R T L LAV ++ V+GC + P +E +P W A A + DWW+ Sbjct: 8 RRTHLALAVAVLFAVSGCAHNIDASKPNVE--IPATWAEVAPAGIELQR------DWWRG 59 Query: 82 FGSSELSELVQEGQRNNYEIAAAYSRVKQAQAQARIAGAPLLPNVGLSAGA----TREMP 137 FGS+ELS L+ + + ++ A RV QA+ A AGA L P + +SAG + P Sbjct: 60 FGSNELSALIDQSLAGSPDLIIAAERVTQAEITASSAGASLFPLLTVSAGTDTGQVKPGP 119 Query: 138 I-SGGTPTNTANASLQVSYEIDFWGKNRAGVEAAEATLRANRYDQQTVALTVTSGIVSTY 196 SG + + +L V+YE+D WG+ A +A A+L A+RYD +TV LT+T+G+ + Y Sbjct: 120 TGSGWARSESTGVALSVNYEVDVWGRVAATTRSANASLNASRYDLETVRLTLTTGVANAY 179 Query: 197 LQVLSLRDRLEIARQNVNNAERVLRLVEAQSRAGAASPLDLARQRSALANQRQLIPDLQQ 256 Q L+LR +L++A++N+ AE++ +VEA+ R GAAS LD++RQRS + QR I LQ Sbjct: 180 FQTLALRMQLQVAQENLAIAEKLFSIVEARYRFGAASALDVSRQRSTVLAQRATILPLQV 239 Query: 257 QEQDAQTALAILLGRPPQNFKVEEKGLAKIQMPRISAGLPSELLTRRPDIRRAEANLAAA 316 QE+ +ALAILLGR PQ +V L + +P +S GLPS L+TRRPD+ EA L A Sbjct: 240 QERQTVSALAILLGRQPQALQVAALSLDTLAIPEVSPGLPSTLITRRPDVASVEAQLLAG 299 Query: 317 NANVAVARAALFPSISLTGSTGAQSSALLSLFDGPNLFASLGASLIAPIFDGGNLRNQQA 376 +ANVA ARAAL P+ISLTGS G S+ALL+L + P + AS++ +FDG +LR + Sbjct: 300 SANVAAARAALLPTISLTGSAGNASAALLTLGN-PAYSIGIAASIVQTLFDGNSLRLRVE 358 Query: 377 LAEAQKEELVQVYRQRVITSLSEVEKALGAIRSLEERYRLKVGEVDQARFAFELAEIRYR 436 E+ + +L + YR+ V T+L EV+ ALG E+ + ++ +A A L+E+RYR Sbjct: 359 TNESTRRQLAESYRRTVYTALKEVDDALGNATRNREQEQAQIAIKKEAERALALSELRYR 418 Query: 437 AGAEDLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGWQDKQ 485 GA+DL +LD QRTL A ++L Q++L RL T ++KALGGGW Q Sbjct: 419 EGADDLNSLLDAQRTLFAADDKLTQLRLLRLTGTTDVFKALGGGWSKPQ 467 >gi|134095560|ref|YP_001100635.1| outer membrane transport protein involved toxic tolerance [Herminiimonas arsenicoxydans] Length = 476 Score = 221 bits (564), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 160/483 (33%), Positives = 242/483 (50%), Gaps = 29/483 (6%) Query: 20 LTRPTRLTLAVTLVLTVAGCVTREVQTDPILEMQVPDKW---------GGGASADV-AHA 69 +T+P TLA+ + L V+GC E Q P + +P W G +AD A Sbjct: 1 MTKPLLSTLALAITLAVSGCAMLEPQL-PKADAAIPAAWPLPPNTAAAGQNVTADTSATK 59 Query: 70 EQLWPDTDWWKQFGSSELSELVQEGQRNNYEIAAAYSRVKQAQAQARIAGAPLLPNVGLS 129 EQ D W F +L EL+ NN ++ A V++A+AQ +I A P + S Sbjct: 60 EQAAADIGWRDFFVDPKLEELIARALHNNRDLRVAVLNVERARAQYQIQNAERFPALDGS 119 Query: 130 AGATREMPISGGT---PTNTANASLQVSYEIDFWGKNRAGVEAAEATLRANRYDQQTVAL 186 R SGG P + +A+L S+E+D +G+ +AA A Q++ L Sbjct: 120 VARNR----SGGNVVNPGDYYSAALSASFELDLFGRIHNLSQAALEQYFAQEEGQRSAQL 175 Query: 187 TVTSGIVSTYLQVLSLRDRLEIARQNVNNAERVLRLVEAQSRAGAASPLDLARQRSALAN 246 ++ + I +TYL + + IA+ +N + LV + RAGA S LDL++ ++ + Sbjct: 176 SLIAEIANTYLTFAADLESQRIAQATFDNQQIAYDLVVKRHRAGAVSGLDLSQAQTTIET 235 Query: 247 QRQLIPDLQQQEQDAQTALAILLGRP------PQNFKVEEKGLAKIQMPRISAGLPSELL 300 R + + AL +L+G P PQ F ++ G+A + A LPS++L Sbjct: 236 ARADVARYAGLVATDRNALTLLVGAPVEDSLLPQGFDLKVSGIAPL-----PAQLPSQVL 290 Query: 301 TRRPDIRRAEANLAAANANVAVARAALFPSISLTGSTGAQSSALLSLFDGPNLFASLGAS 360 RRPD+R+ E L ANAN+ ARAA FPSISLTGS G+ S+ L LFD F S Sbjct: 291 LRRPDVRQTEHVLRGANANIGAARAAFFPSISLTGSVGSASNQLSGLFDSGTKFWSFVPQ 350 Query: 361 LIAPIFDGGNLRNQQALAEAQKEELVQVYRQRVITSLSEVEKALGAIRSLEERYRLKVGE 420 + PIF GG LR +A A ++ + Y + + + EV AL +L +R + + Sbjct: 351 ISLPIFHGGALRANLGVATADRDIALARYEKAIQSGFREVADALALTSTLAQRRQAQQAL 410 Query: 421 VDQARFAFELAEIRYRAGAEDLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGG 480 +D A A++L++ RY+ G + L++LD QRT AQ L +L V+LYK LGGG Sbjct: 411 LDAASRAYDLSKARYQYGRDSFLILLDAQRTFYTAQQSLVAAQLAEQGNRVTLYKVLGGG 470 Query: 481 WQD 483 W++ Sbjct: 471 WEE 473 >gi|134095881|ref|YP_001100956.1| outer membrane transport protein involved in copper (silver) tolerance [Herminiimonas arsenicoxydans] Length = 474 Score = 187 bits (476), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 150/465 (32%), Positives = 233/465 (50%), Gaps = 15/465 (3%) Query: 25 RLTLAVTLVLTVAGCVTREVQTDPILEMQVPDKWGGGASADVAHAEQLWPDTDWWKQFGS 84 +LTL V ++ C T P P A++ A +Q +T W F Sbjct: 4 QLTLTVLAASVLSACSMAPKYTRP----DAPVAADYPAASAAADKQQRAHETGWRNFFPD 59 Query: 85 SELSELVQEGQRNNYEIAAAYSRVKQAQAQARIAGAPLLPNVGLSAGATREMPISGGTPT 144 L L+ NN ++ A R+++A+AQ I A LLPN+ + +R + +PT Sbjct: 60 QRLQALIGAALANNRDLRVAALRIEEARAQYNIQSADLLPNLNGTFTGSRARTPASISPT 119 Query: 145 --NTANASLQV-----SYEIDFWGKNRAGVEAAEATLRANRYDQQTVALTVTSGIVSTYL 197 ++ +++ QV S+E+DF+G+ + +AA A+ A Q+ +++ + + YL Sbjct: 120 GIDSVSSAYQVGLSLASFELDFFGRVHSLNDAALASYLATEEAQRAAHISLVAEVAKAYL 179 Query: 198 QVLSLRDRLEIARQNVNNAERVLRLVEAQSRAGAASPLDLARQRSALANQRQLIPDLQQQ 257 + ++L +A+ + + L + + GA+S LDL + + L + R L +Q Sbjct: 180 AERAFAEQLALAQSTLKSRGTAYDLAKQRFEVGASSALDLRQNEALLQSARVAQVTLARQ 239 Query: 258 EQDAQTALAILLGRPPQNFKVEEKGLAKIQMPRISAGLPSELLTRRPDIRRAEANLAAAN 317 A AL +L+G+P F + A+ + I AGLPS+LLT+RPDIR AE +L AAN Sbjct: 240 RAQALNALTLLVGQPLTGFPEAQPLSAQNIVTDIPAGLPSDLLTQRPDIRSAEQSLLAAN 299 Query: 318 ANVAVARAALFPSISLTGSTGAQSSALLSLFDGPNLFASLGASLIAPIFDGGNLRNQQAL 377 AN+ ARAA FP ISLT G SS L +LFD + L+ PIFD G L Sbjct: 300 ANIGAARAAFFPRISLTAGIGTASSTLSNLFDSGTRAWTFAPQLVLPIFDAGRNSANLTL 359 Query: 378 AEAQKEELVQVYRQRVITSLSEVEKALGAIRSLEERY--RLKVGEVDQARFAFELAEIRY 435 +E +K + Y + + ++ EV AL A LEE+ + +V E R +LA+ R+ Sbjct: 360 SEVRKNIAIANYEKSIQSAFREVSDALVARDLLEEQIDAQRRVQEAQAER--LKLADQRF 417 Query: 436 RAGAEDLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGG 480 + G L VLD QR L A+ L Q +L RL + LY++LGGG Sbjct: 418 QNGIASSLDVLDAQRELFSAEQDLVQARLLRLTNAIDLYRSLGGG 462 >gi|134095761|ref|YP_001100836.1| putative outer membrane transport protein involved in copper (silver) tolerance (cusC) [Herminiimonas arsenicoxydans] Length = 502 Score = 181 bits (459), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 135/417 (32%), Positives = 220/417 (52%), Gaps = 15/417 (3%) Query: 78 WWKQFGSSELSELVQEGQRNNYEIAAAYSRVKQAQAQARIAGAPLLPNVGLSAGATR-EM 136 W F + L +L+ + NN ++ AA RV++A+A I A P + AG+ R + Sbjct: 66 WRDYFTDARLQDLIAQALENNRDLRAAVLRVEEARAAYGIQRAEQFPAIAAQAGSERAHV 125 Query: 137 PIS---GGTPTNTANASLQV---SYEIDFWGKNRAGVEAAEATLRANRYDQQTVALTVTS 190 P G P ++ + + S+EIDFWG+ R+ +AA A+ ++ V +++ + Sbjct: 126 PADLSLTGKPAMSSQYHVSLGLASWEIDFWGRVRSLRDAALENYLASDEARRAVTISLVA 185 Query: 191 GIVSTYLQVLSLRDRLEIARQNVNNAERVLRLVEAQSRAGAASPLDLARQRSALANQRQL 250 + ++YL + L +R+ +AR + + E LR+ + G+ S L+L + ++ L+ + L Sbjct: 186 QVANSYLALCELDERIALARLTIASREESLRIFTRRVEVGSTSRLNLTQVQTLLSQAQAL 245 Query: 251 IPDLQQQEQDAQTALAILLG----RPPQNFKVEEKGLAKIQMPRISAGLPSELLTRRPDI 306 L+Q AL +L+G P + +++E+ ++ +P + GLPS+LL RRPDI Sbjct: 246 GAQLEQARALQANALILLVGVTLELPATSSRLDER---QMLLP-LQPGLPSDLLIRRPDI 301 Query: 307 RRAEANLAAANANVAVARAALFPSISLTGSTGAQSSALLSLFDGPNLFASLGASLIAPIF 366 AE L AA+A + ARAA FP I+LTGS G S+ L LF + + S+ P+F Sbjct: 302 VAAEHQLKAAHAQIGAARAAFFPRIALTGSFGTASAELDGLFAAGSRAWTFAPSISLPLF 361 Query: 367 DGGNLRNQQALAEAQKEELVQVYRQRVITSLSEVEKALGAIRSLEERYRLKVGEVDQARF 426 D G N +LAEA+++ V Y + + + +V AL A + L ++ + + Sbjct: 362 DAGRRSNNLSLAEARRDLAVANYEKTIQAAFRDVADALAARQWLAQQLLIAQAALTTQTE 421 Query: 427 AFELAEIRYRAGAEDLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGWQD 483 L+++RY GA L VLD QR L A+ QL QI+ L + VSLY ALGGG D Sbjct: 422 RARLSQLRYDNGAAAYLDVLDAQRDLLVAEQQLVQIRRALLSSQVSLYAALGGGALD 478 >gi|134095533|ref|YP_001100608.1| putative RND efflux system, outer membrane lipoprotein, NodT [Herminiimonas arsenicoxydans] Length = 499 Score = 166 bits (419), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 139/487 (28%), Positives = 223/487 (45%), Gaps = 35/487 (7%) Query: 23 PTRLTLAVTLVLTVAGCV-------------TREVQTDPILEMQVPDKWGGGASADVAHA 69 P R + VTL+ ++ C T + DPI+ D G +A Sbjct: 7 PCRYLIVVTLIQLISACTVGPDYIRQPPPTETAYTKKDPIVT--TADNNG--------NA 56 Query: 70 EQLWPDT----DWWKQFGSSELSELVQEGQRNNYEIAAAYSRVKQAQAQARIAGAPLLPN 125 ++ D DWW F S++L E V RNN + AA + +K++Q + P Sbjct: 57 QRFHTDAAISADWWNLFHSADLGEAVDRSLRNNASLQAAQASLKESQHNLQAGYGVFFPQ 116 Query: 126 VGLSAGATREMP----ISGGTPTNTANA---SLQVSYEIDFWGKNRAGVEAAEATLRANR 178 +G S ATR++P +P N +SY +D +G R VEA A + Sbjct: 117 IGGSFSATRQLPSAFRFGSASPVGIFNLFTLGAAISYTLDIFGGERRMVEALGAQADYQK 176 Query: 179 YDQQTVALTVTSGIVSTYLQVLSLRDRLEIARQNVNNAERVLRLVEAQSRAGAASPLDLA 238 Y LT++ +V+T + + + E +Q + + L + E Q+ G A + Sbjct: 177 YVALATYLTLSGNVVNTAIARAAYHAQYEATQQLILRQQEQLAVAENQAAHGIAPYATVL 236 Query: 239 RQRSALANQRQLIPDLQQQEQDAQTALAILLGRPPQNFKVEEKGLAKIQMPR-ISAGLPS 297 RS LA+ + + + Q+ A LA L G LA++++P+ + LPS Sbjct: 237 SLRSLLASSQAALAVVAQKRDQADHLLANLQGTTASGTYTSSFDLAQLELPQDLPLTLPS 296 Query: 298 ELLTRRPDIRRAEANLAAANANVAVARAALFPSISLTGSTGAQSSALLSLFDGPNLFASL 357 EL+ +RPD+ AEA L A+A V VA AALFPS SL + ++ L +L D + F S+ Sbjct: 297 ELVRQRPDVLAAEAQLHVASAGVGVATAALFPSFSLGANYALGNTKLGNLSDSSSKFWSV 356 Query: 358 GASLIAPIFDGGNLRNQQALAEAQKEELVQVYRQRVITSLSEVEKALGAIRSLEERYRLK 417 G+ + PIF GG +++ A+ ++ + YRQ V+++ +V L AI + + + Sbjct: 357 GSGVDVPIFQGGTAWHKRRAAQDAYQQALANYRQTVLSAFQQVADVLTAIEHDAQAVKAQ 416 Query: 418 VGEVDQARFAFELAEIRYRAGAEDLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKAL 477 + A +L E+ YRAG L VL +++ Q R Q T +L+ AL Sbjct: 417 AESLGAAEQTLKLIEVNYRAGLVSYLDVLAANTQFYQSKIAYLQALGLRYQDTTALFVAL 476 Query: 478 GGGWQDK 484 GGGW +K Sbjct: 477 GGGWWNK 483 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.129 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 749,326 Number of extensions: 27973 Number of successful extensions: 148 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 122 Number of HSP's successfully gapped: 10 Length of query: 496 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 410 Effective length of database: 716,977 Effective search space: 293960570 Effective search space used: 293960570 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)