BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3400.p
         (323 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094287|ref|YP_001099362.1| thymidylate synthase [Herminiim...   544   e-156

>gi|134094287|ref|YP_001099362.1| thymidylate synthase
           [Herminiimonas arsenicoxydans]
          Length = 324

 Score =  544 bits (1402), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 244/324 (75%), Positives = 289/324 (89%), Gaps = 1/324 (0%)

Query: 1   MKQYQDLIQDVLENGSWQDNRTGIRTLSIPGAMMRFDLQK-GFPAVTTKRLAFKSVVGEL 59
           MKQY DL++ VL++G+WQ+NRTGIRT+SIPGAM+RFDLQK GFPA+TTKRLAFKSV+GEL
Sbjct: 1   MKQYLDLVRTVLDSGTWQENRTGIRTISIPGAMLRFDLQKDGFPAITTKRLAFKSVIGEL 60

Query: 60  CGFLRATRSAADFRALGCKVWDQNANENADWLANPFRTGSDDLGPVYGVQWRQWPAYKLI 119
            GFLRA+RSAA+FRALGCKVWDQNANENA+WL NP+R G DDLGPVYGVQWRQWPAYKL+
Sbjct: 61  IGFLRASRSAAEFRALGCKVWDQNANENAEWLNNPYRLGEDDLGPVYGVQWRQWPAYKLL 120

Query: 120 DAAQSAQIEAARAKGFALVSTLQDEGVDKVLLYKAVDQLRECLDTIVKNPGSRRILFHGW 179
           DA    QI+ A+ +GF L+S + DEG+DKVL+YKA+DQLR+CLDTI+ NP SRRILFHGW
Sbjct: 121 DADNKLQIQDAQKRGFRLISAVNDEGIDKVLMYKAIDQLRDCLDTIINNPASRRILFHGW 180

Query: 180 NCAVLDEIALPACHLLYQFLPNQSTGEISLCLYVRSNDIGLGTPFNLAEGAALLHLVARL 239
           NCA LD IALPACHLLYQFLPNQ+T EISLCLY+RSNDIGLGTPFNLAE AALLH+V RL
Sbjct: 181 NCAELDAIALPACHLLYQFLPNQTTKEISLCLYIRSNDIGLGTPFNLAEAAALLHVVGRL 240

Query: 240 TGYQPRWFSYFVGDAHIYENHIDMVKEQLTRAPYPLPQLAIAERVPEFAKTGQYAPQWLE 299
           TGY P+WF+YF+GDAHIYENH+DM+ EQ+TR PY  P+L +++R+P++  TG+Y P+WLE
Sbjct: 241 TGYTPKWFTYFIGDAHIYENHLDMLNEQMTREPYAAPRLVLSDRIPDYRVTGKYEPEWLE 300

Query: 300 LIEPSDFSLLNYQHHAPLTAPMAV 323
            +EP DFSL NYQHHAPL+APMAV
Sbjct: 301 KLEPGDFSLENYQHHAPLSAPMAV 324


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 619,753
Number of extensions: 24309
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 241
Effective length of database: 730,157
Effective search space: 175967837
Effective search space used: 175967837
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)