BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3395.p (291 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093665|ref|YP_001098740.1| branched chain amino acid ABC t... 123 9e-30 gi|134095639|ref|YP_001100714.1| high-affinity branched-chain am... 107 6e-25 gi|134095849|ref|YP_001100924.1| high-affinity branched-chain am... 87 1e-18 gi|134096410|ref|YP_001101485.1| high-affinity branched-chain am... 64 1e-11 >gi|134093665|ref|YP_001098740.1| branched chain amino acid ABC transporter permease [Herminiimonas arsenicoxydans] Length = 293 Score = 123 bits (309), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 93/287 (32%), Positives = 153/287 (53%), Gaps = 15/287 (5%) Query: 10 ILNGLLVGGYYLLIALGLSLIFSLGGIVNLAHGAFYAIGAYLAVEITR---------HLG 60 +L G+ L+A GL LIF + I+NLA G+ YA+GAY + +T HL Sbjct: 8 LLAGVFQAAVLFLVASGLQLIFGVQRIINLACGSIYALGAYFGIFVTSWALSKGLPVHL- 66 Query: 61 FAGAVVLSPLLVALLGILFERFLLRRFYSADPILGLLLTFGLSMVAEQAIRILWGASP-- 118 F ++ + +++ L+GI ER L+R Y+ LLLTF + ++ + +R WGA P Sbjct: 67 FPFVLLGAGIVIGLIGIPLER-LIRTIYNRPESFQLLLTFAVMLMFQDVLRFFWGADPQQ 125 Query: 119 LPASIPPAFKGQLMVGDFMYSRYRLLMLAIVLAALTLIWLLLNKTSFGRVVRAGVQKPDM 178 LP ++ F G L Y ++++A+ ++ + L KT G+++RA + + Sbjct: 126 LP-NVSMTF-GILSAFGVSMPTYNVMVIAVAVSLAIGMAYFLGKTKTGKILRATAENRET 183 Query: 179 VAVLGIGLQPYMTAIVMLGVGLAALAGVLFAPISGVQPAMGAEIMTAAFVVVVIGGLGSF 238 A +GI + + LG L + G L P + MG E++ AF VVVIGGLGS Sbjct: 184 SAAMGINVTRVYVMVFTLGTMLGTIGGALVIPNAAASLEMGVELVVEAFAVVVIGGLGSM 243 Query: 239 WGVVLAAVLVGVVRGITIQFYAPAGEASMYLLMLLVLIFRPRGLLGE 285 G + A++VG++R ++ +Y A ++Y ++L VLI++P GL G+ Sbjct: 244 KGAAVGALIVGLIRALSAMYYPEAEILAIYAIVLAVLIWKPAGLYGK 290 >gi|134095639|ref|YP_001100714.1| high-affinity branched-chain amino acid ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 309 Score = 107 bits (267), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 87/303 (28%), Positives = 163/303 (53%), Gaps = 24/303 (7%) Query: 7 LEQILNGLLVGGYYLLIALGLSLIFSLGGIVNLAHGAFYAIGAYLAVEITRHLGFAGAVV 66 ++QI+NGL++G Y L+ALG ++++ + ++N AHG IGA + I + L + Sbjct: 5 IQQIINGLVLGSMYALVALGYTMVYGVLNLINFAHGDVLMIGAMAGLTILKMLNTVAPDL 64 Query: 67 --LSPLLVALLG---------ILFERFLLRRFYSADPILGLLLTFGLSMVAEQAIRILWG 115 + L++A+LG +L ER RR +A + L+ G+S++ + ++WG Sbjct: 65 PGIVKLIIAILGAIPVCVAVNVLIERVAYRRLRNAPRLAPLITAIGVSILLQTFAMMIWG 124 Query: 116 ASPLPASIPPAFKGQ-LMVGDFMYSRYRLLMLAIVLAALTLIWLLLNKTSFGRVVRAGVQ 174 SPLP P G+ L + + S ++++L + A++ L+ LL+ KT GR +RA + Sbjct: 125 RSPLP--FPQVMPGEPLHILGALISPTQVMLLILAAASMLLLALLIEKTKLGRAMRATAE 182 Query: 175 KPDMVAVLGIGLQPYMTAIVMLGVGLAALAGVLF-APISGVQPAMGAEIMTAAFVVVVIG 233 P + ++G+ + ++G LAA+AGV++ A S Q AMG AF V+G Sbjct: 183 NPRVAGLMGVDSNRVIVMTFVIGATLAAIAGVMWAANYSSAQFAMGFVPGLKAFSAAVLG 242 Query: 234 GLGSFWGVVLAAVLVGVVRGITIQFY---------APAGEASMYLLMLLVLIFRPRGLLG 284 G+G+ +G +L +L+G++ + + + + ++++++VL RP G++G Sbjct: 243 GIGNIYGAMLGGILLGLIESLGAGYIGDLTGGFLGSHYQDIFAFVVLIIVLTLRPSGIMG 302 Query: 285 ERI 287 ER+ Sbjct: 303 ERV 305 >gi|134095849|ref|YP_001100924.1| high-affinity branched-chain amino acid ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 291 Score = 87.0 bits (214), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 87/287 (30%), Positives = 142/287 (49%), Gaps = 10/287 (3%) Query: 6 LLEQILNGLLVGGYYLLIALGLSLIFSLGGIVNLAHGAFYAIGAYLAVEITRHLGFAG-- 63 L+ +L+GL +G Y L+ALG +++S VN AHG +GA LAV ++ G + Sbjct: 4 FLQYVLSGLSIGAIYSLVALGFYIMWSACRSVNFAHGDVMMVGAVLAV-VSNDFGLSPYI 62 Query: 64 AVVLSPLLVALLGILFERFLLRRFYS-ADPILGLLLTFGLSMVAEQAIRILWG--ASPLP 120 + LS + L G+L ERF +R + A+ I +L T + ++ E + I +G A LP Sbjct: 63 GIPLSIVACVLYGVLVERFAVRPYTKEANAIGWMLTTIAIGIMVESFVTIKFGSFARALP 122 Query: 121 ASIPPAFKGQLMVGDFMYSRYRLLMLAIVLAALTLIWLLLNKTSFGRVVRAGVQKPDMVA 180 + P K + G +Y + L+ L ++L + L + +T GR +RA Sbjct: 123 S--PGVDKPITIFGAGIYLQEMLIPLFVILFMIGL-EVFYRRTMLGRAMRAVAFNRIAAG 179 Query: 181 VLGIGLQPYMTAIVMLGVGLAALAGVLFAPISGVQPAMGAEIMTAAFVVVVIGGLGSFWG 240 ++GI + + L GL +AG+L PI V MG I F V ++ + S G Sbjct: 180 MMGINVGMVTSFSFALAAGLGGIAGILIGPIIQVSSTMGVLIGLKGFAVAIMASITSARG 239 Query: 241 VVLAAVLVGVVRGITIQFYAPAG-EASMYLLMLLVLIFRPRGLLGER 286 VV+ +L GV+ + + A E + +M+LVL+ P+GL G + Sbjct: 240 VVITGLLYGVLEKFVEGYISSAAREVVGFSIMILVLLMFPQGLFGRK 286 >gi|134096410|ref|YP_001101485.1| high-affinity branched-chain amino acid ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 294 Score = 63.5 bits (153), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/290 (23%), Positives = 135/290 (46%), Gaps = 26/290 (8%) Query: 20 YLLIALGLSLIFSLGGIVNLAHGAFYAIGAYLAVEITR-----HLGFAG----AVVLSPL 70 Y ++A+G +L F + ++ +HG +GA+ + + +G AVVL+ + Sbjct: 3 YAMVAVGFTLFFGVLDVIKFSHGDTLMVGAFAGLTASTGVLMLDIGSPWIRLLAVVLAAV 62 Query: 71 LVA-LLGILFERFLLRRFYSADPILGLLLTFGLSMVAEQAIRILW----GASPLPASIPP 125 V LLG ++L+ + A P+ LL T L V +A+R+ + + P P+ +P Sbjct: 63 CVTGLLGAAIAKWLVLPLHKAPPLNTLLATLMLGTVMREAVRLFYPDGSNSQPFPSLLP- 121 Query: 126 AFKGQLMVGDFMYSRYRLLMLAIVLAALTLIWLLLNKTSFGRVVRAGVQKPDMVAVLGIG 185 + G F +++L LA + + L+ +T G +RA Q + ++GI Sbjct: 122 --TDAIEFGGFALRADNVILLLSGLAIIAGVHFLITRTRLGMAIRAVAQDGETARLMGIN 179 Query: 186 LQPYMTAIVMLGVGLAALAGVLFA-PISGVQPAMGAEIMTAAFVVVVIGGLGSFWGVVLA 244 + + LG G+AALAGV+ + + +G + F ++GGLG+ +G ++ Sbjct: 180 FEAVVLLTFALGSGMAALAGVMNGLYYNEINFNVGLLLGVIGFAAAILGGLGNIYGAIIG 239 Query: 245 AVLVG---VVRGITIQFYAPA-----GEASMYLLMLLVLIFRPRGLLGER 286 L V+ T+ P + + ++++++ ++P GL+ E+ Sbjct: 240 GFLFAGLQVLGSATLPALIPNIPSAYKDVFAFAVVIILMAWKPTGLIAEK 289 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.332 0.148 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 371,543 Number of extensions: 10898 Number of successful extensions: 98 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 86 Number of HSP's successfully gapped: 6 Length of query: 291 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 210 Effective length of database: 733,452 Effective search space: 154024920 Effective search space used: 154024920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 128 (53.9 bits)