BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3394.p
         (433 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093666|ref|YP_001098741.1| hypothetical protein HEAR0390 [...    79   4e-16
gi|134093984|ref|YP_001099059.1| putative amino acid ABC transpo...    57   2e-09

>gi|134093666|ref|YP_001098741.1| hypothetical protein HEAR0390
           [Herminiimonas arsenicoxydans]
          Length = 429

 Score = 79.0 bits (193), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 161/378 (42%), Gaps = 43/378 (11%)

Query: 25  RSARRRRLLSA-AAGAAV-----LGFPAIVRAQSDKIIIGHLTPRTGFLGPMGEYAVMSI 78
           +S +RR +L A  AG AV     LG PA   AQ+  I IG + PR G  G +GE  +  +
Sbjct: 6   KSNQRRSVLKAIGAGVAVGASGFLGVPAF--AQNKPIRIGIIAPRGGVAGTIGECGLRGV 63

Query: 79  NLAVEEQNKAGGLLGRQLTLLSEDSVNPPTASTKAQRLLERDGAALLIGEISSASALGIA 138
                  N AGG+ GR++ L+ ++  +P     + ++L+ ++    + G +SS  +L +A
Sbjct: 64  EWTTARINAAGGIGGRKVELVIQEETSPKDTIDRFRKLVLQEKVDCVQGIVSSGVSLALA 123

Query: 139 QVAQ--RNKKLFMNTGCNSDELRGKSCN-KFMFHIEAANSTYVKACGQQLLHNGLIKG-- 193
             A+  R   +F + G   D ++      K++F    +     +A    LL     KG  
Sbjct: 124 PAAEDSRMPTIFWD-GTTQDGVKETMPKPKYVFR---STDNECEAVMASLLAIKHFKGKF 179

Query: 194 KKLYALTADYAFGHDLLRTAKTFVAANG--GTIANDELVPTDATDFSPYLLKIRQAKPDL 251
           K++  +  DY++G +     +  +   G    + +++       D +  +  ++ AKPDL
Sbjct: 180 KRIACVNPDYSYGRNTWTAFQALLKKYGIEHEVVSEQWSKIGNLDLTSNVAALKAAKPDL 239

Query: 252 VISNLAGNQITNFIKQYAEFGLP------FPIAGFGFDTVAAWGAGADNFAGTWPTTWHH 305
           + S+L    +  F+KQ    GL        P AG+         A    F       W H
Sbjct: 240 IFSSLLFADLPVFMKQAHNAGLTEGTRFVLPAAGWQHT------AMKKEFTPE-GIVWGH 292

Query: 306 DV---DAPSA----KAFVSAFVKKYGKPPENQAWGEYVGFR----SIAQAIAETKSLDTM 354
           +    D P A    K FV  +  KY   P  +A   Y         + +A+A  KS  T 
Sbjct: 293 NTMYFDDPKASATQKEFVKWYADKYKDYPHWEADRAYFSMMVYKAGVEKALAAKKSWPTP 352

Query: 355 KLIEYFEKGAQIDILKGR 372
           + I     G Q++ L G+
Sbjct: 353 EEICAAIPGVQVESLGGK 370


>gi|134093984|ref|YP_001099059.1| putative amino acid ABC
           transporter [Herminiimonas arsenicoxydans]
          Length = 381

 Score = 56.6 bits (135), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 90/205 (43%), Gaps = 6/205 (2%)

Query: 51  QSDKIIIGHLTPRTGFLGPMGEYAVMSINLAVEEQNKAGGLLGRQ---LTLLSEDSVNPP 107
           Q   I IG + P TG    MG+       +AVE+ N  G  +G +     LL+ED  + P
Sbjct: 25  QEQVIKIGSVAPITGTDAHMGKDNENGARMAVEDLNAKGTTIGGKKVKFQLLAEDDASDP 84

Query: 108 TASTKAQRLLERDGAALLIGEISSASALGIAQVAQRNKKLFMNTGCNSDELRGKSCNKFM 167
             +T A + L   G   +IG ++S + +  +++   N  +   +   ++    +   K  
Sbjct: 85  KQATAAAQKLVDAGVVAVIGHLNSGTTIPASRI-YANAGIPQVSPSATNPKYTQQGFKTA 143

Query: 168 FHIEAANSTYVKACGQQLLHNGLIKGKKLYALTADYAFGHDLLRTAKTFVAANGGTIAND 227
           F + A ++   +  GQ  +    + GK +  +    A+G  +       V A GG+I   
Sbjct: 144 FRVVANDAQLGQVLGQYAVKT--LGGKSVAVIDDRTAYGQGVADEFAKGVKAAGGSIVAS 201

Query: 228 ELVPTDATDFSPYLLKIRQAKPDLV 252
           +     ATDF+  L  I+  KPD++
Sbjct: 202 QYTNNKATDFNSILTSIKAKKPDII 226


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 754,830
Number of extensions: 30178
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 2
Length of query: 433
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 349
Effective length of database: 723,567
Effective search space: 252524883
Effective search space used: 252524883
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)