BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3393.p
         (234 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095895|ref|YP_001100970.1| GntR family transcriptional reg...    65   2e-12
gi|134094688|ref|YP_001099763.1| GntR family transcriptional reg...    59   1e-10
gi|134094411|ref|YP_001099486.1| GntR family transcriptional reg...    56   2e-09
gi|134095633|ref|YP_001100708.1| GntR family transcriptional reg...    54   8e-09

>gi|134095895|ref|YP_001100970.1| GntR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 247

 Score = 65.5 bits (158), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 63/116 (54%)

Query: 14  KIQHATLSERVYQDLCELIQAGQVRPGQKLTLKGLSDALGTSPMPVREAVRQLAAEGALE 73
           +++   L + V + L  LI  G + PG KL  + + + LG S  P+REA++ LA+EG ++
Sbjct: 18  RVERQRLHDAVVEHLQNLIIEGVLAPGMKLNEREVCERLGISRTPLREAMKVLASEGLID 77

Query: 74  ILPNRAMRVPLMTKGKFRELLKIRLALEGLAAEHAARHIDAAALEEVARLHEDLSV 129
           I PNR   V  M   +  E  ++   LE L+ E AA  I  A + ++  LHE + V
Sbjct: 78  IAPNRGAFVSKMNDNEIWEAFEMMSGLEALSGELAAERISPAEIADIKVLHEAMLV 133


>gi|134094688|ref|YP_001099763.1| GntR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 220

 Score = 59.3 bits (142), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 5/186 (2%)

Query: 21  SERVYQDLCELIQAGQVRPGQKLTLKGLSDALGTSPMPVREAVRQLAAEGALEILPNRAM 80
           SE + + + E+I  G++ PG  L    L+   G S  P+REA+ QLA+ G + I P R  
Sbjct: 5   SEVLREAIEEMIAVGKLPPGHHLDETELAKEFGVSRTPIREALIQLASMGIIVIRPRRGA 64

Query: 81  RVPLMTKGKFRELLKIRLALEGLAAEHAARHIDAAALEEVARLHEDLSVEMKRKKPNVDL 140
            V  +   +  E+ ++   LE + A  AAR +  A    +   H  L+ E  R   + D 
Sbjct: 65  IVAEIGPQQLIEMFEVMAELEAMCARLAARRMSPAGHATLKATH--LACEEARDSADSDA 122

Query: 141 VIRLNKQLHFAAYQGSGMPTLVDLIAGLWLQVGPVINLDLRAGSRRLAEAPALVHHARLL 200
               N++ H   Y GS    L +    L  ++ P   L LR  +R  A   +   H  ++
Sbjct: 123 YFYKNEEFHQQIYIGSQNSFLEEQARVLQRRLRPYRRLQLRVRNRVQA---SFDEHGAVV 179

Query: 201 EGLREG 206
           + + EG
Sbjct: 180 DAIIEG 185


>gi|134094411|ref|YP_001099486.1| GntR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 248

 Score = 55.8 bits (133), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 58/108 (53%)

Query: 20  LSERVYQDLCELIQAGQVRPGQKLTLKGLSDALGTSPMPVREAVRQLAAEGALEILPNRA 79
           L++  Y+ L E I   ++ PG  ++   LS+       P+REA+++LA E  L +LP R 
Sbjct: 39  LTDLAYEQLEEAIITLRIPPGSVISELTLSEMFNIGRTPIREAIQRLAREHLLLVLPQRG 98

Query: 80  MRVPLMTKGKFRELLKIRLALEGLAAEHAARHIDAAALEEVARLHEDL 127
           + VP +   K  +LL+ R  +E L  + AAR    A  E  ARLH++ 
Sbjct: 99  VMVPEVDLKKQLKLLETRREVERLICKSAARRATPAEREVFARLHDEF 146


>gi|134095633|ref|YP_001100708.1| GntR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 232

 Score = 53.5 bits (127), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 4/128 (3%)

Query: 25  YQDLCELIQAGQVRPGQKLTLKGLSDALGTSPMPVREAVRQLAAEGALEILPNRAMRVPL 84
           Y+ L E+I   ++ PG K++ K L+ +LG    P+REA+++LA EG+++ILP   + V  
Sbjct: 26  YRILEEMIVTLKLPPGSKISEKALNRSLGFGRTPLREALQRLAIEGSVKILPRSGVIVSE 85

Query: 85  MTKGKFRELLKIRLALEGLAAEHAARHIDAAALEEVARLHEDLSVEMKRKKPNVDLVIRL 144
           +       ++++R  LE + A  AAR     A+E+  R+   L+ +  R     D  I +
Sbjct: 86  IDLADQLNMIEVRRELEKIIAGRAAR----LAMEDQRRVFSKLAEDFDRAAEENDSTIFI 141

Query: 145 NKQLHFAA 152
                F A
Sbjct: 142 ETDREFNA 149


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.136    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 394,976
Number of extensions: 15075
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 5
Length of query: 234
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 155
Effective length of database: 740,042
Effective search space: 114706510
Effective search space used: 114706510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)