BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3391.p
         (213 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093681|ref|YP_001098756.1| DedA family protein [Herminiimo...   198   1e-52

>gi|134093681|ref|YP_001098756.1| DedA family protein [Herminiimonas
           arsenicoxydans]
          Length = 213

 Score =  198 bits (504), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 100/200 (50%), Positives = 140/200 (70%), Gaps = 2/200 (1%)

Query: 1   MDILLFLVDFIVHIDRHLAELAVSYGPWLFLILFLIIFCETGLVVTPILPGDSLLFVTGA 60
           MD + F  D I+H+D++L      YG  ++L+LF IIFCETGLVV P LPGD+LLF+ GA
Sbjct: 1   MDFMQFF-DMILHVDKYLGTFIAQYGALIYLVLFTIIFCETGLVVFPFLPGDTLLFIAGA 59

Query: 61  LAATGAYDIHLMVLTLIVAAILGDSTNYQIGKMLGIKVFDKPNSRIFKKQYLEKTHAFFE 120
             A+G  ++ L++  LIVAAILG++ NY IG+ +G KVF   + R   +  L+KTH+F+E
Sbjct: 60  FCASGGMNLWLLLSLLIVAAILGNTVNYWIGQRIGEKVFTH-DYRWLDRAALQKTHSFYE 118

Query: 121 KHGGKAIIIARFAPIVRTFAPFVAGVGAMTYPRFFFYNVIGGIAWVASFSYAGYFFGNLP 180
            HGGK +I+ARF PIVRTFAPFVAGV  MT+ RF F+NV G + WVA     GY FGN+P
Sbjct: 119 NHGGKTLILARFLPIVRTFAPFVAGVSKMTFVRFQFFNVTGAVLWVALLVVGGYLFGNIP 178

Query: 181 VVKQNLSLLIVAIVIVSILP 200
           +++ +L+ +++  V  + +P
Sbjct: 179 IIRDHLNTIVLVGVGAAAIP 198


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.332    0.149    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 385,702
Number of extensions: 14915
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 3
Length of query: 213
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 135
Effective length of database: 743,337
Effective search space: 100350495
Effective search space used: 100350495
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 127 (53.5 bits)