BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3390.p (372 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095710|ref|YP_001100785.1| putative FMN oxidoreductase [He... 407 e-115 gi|134093305|ref|YP_001098380.1| putative NADH:FMN flavin oxidor... 342 1e-95 gi|134094653|ref|YP_001099728.1| N-ethylmaleimide reductase, FMN... 148 4e-37 >gi|134095710|ref|YP_001100785.1| putative FMN oxidoreductase [Herminiimonas arsenicoxydans] Length = 368 Score = 407 bits (1047), Expect = e-115, Method: Compositional matrix adjust. Identities = 206/351 (58%), Positives = 251/351 (71%), Gaps = 1/351 (0%) Query: 5 LFSPLTLRGLTLPNRIAVSPMCQYSATDGLANDWHLVHLGSRAVGGAGLVLAEATAVLPE 64 LF PL LR + L NRI + PMCQYSA DG+ + WH VH GSRA+GGAGL++ EATAV + Sbjct: 4 LFEPLKLRDIKLRNRIGIPPMCQYSAQDGMPSAWHTVHYGSRAIGGAGLMILEATAVSED 63 Query: 65 GRISSADLGLWKDEHIAPLRRITRFIEQQGAVPGVQLAHAGRKASVLRPWVGPAASVPPA 124 GRIS+ DLG+WKD HI PL I RF + +QLAHAGRKA V W S+PP Sbjct: 64 GRISTGDLGIWKDAHIEPLSHIARFATENECAAAIQLAHAGRKAGVALGW-QEQGSLPPN 122 Query: 125 DGGWVPQAPSALAFDTTYTQPTALTVQDIAGLVQAFAKAAQRALAAGFKVIELHGAHGYL 184 +GGW APS +AF + P L V +I +V FA AA+RALAAGF VIE+H AHGYL Sbjct: 123 EGGWRTHAPSPIAFGPKFATPVELNVNEITTIVATFASAARRALAAGFPVIEIHAAHGYL 182 Query: 185 GHQFLSPLSNKRDDQYGGSFENRIRFLLETVRATRAVWPDELPLLVRLSATDWAEGGWTP 244 HQFLSPLSNKR D YGGSF NR R L E + + RAVWPD LP+LVRLSATDWA+ GW Sbjct: 183 LHQFLSPLSNKRTDDYGGSFINRTRMLREVITSVRAVWPDRLPMLVRLSATDWADHGWNI 242 Query: 245 EETVALSIRLRELGVDLVDVSTGGNLPAAAIPVGPGYQTGFAAQVKAQAGIATGTVGMIT 304 EET+ L ++ LGVDLVDVS+GG +P +P GPGYQT F+A+++ ++G+ T VGMIT Sbjct: 243 EETIELCRQMAPLGVDLVDVSSGGLVPDVTVPEGPGYQTEFSARIRRESGMRTSAVGMIT 302 Query: 305 DAIQAEHVLRTGQADLVLLARELLRDPYWPMHAAQQLRHEMAWPPQYVRAA 355 QA+HV+R+ QADLVL+ RE+LRDPYWP+HAA+ L + WP QY RAA Sbjct: 303 SPEQADHVIRSEQADLVLIGREILRDPYWPLHAARALGFSIEWPAQYGRAA 353 >gi|134093305|ref|YP_001098380.1| putative NADH:FMN flavin oxidoreductase [Herminiimonas arsenicoxydans] Length = 370 Score = 342 bits (878), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 180/354 (50%), Positives = 230/354 (64%), Gaps = 2/354 (0%) Query: 3 SQLFSPLTLRGLTLPNRIAVSPMCQYSATDGLANDWHLVHLGSRAVGGAGLVLAEATAVL 62 S LFSP TLR LTLPNRI VSPMCQYSA +G A +WH++HLG A+ GAG+++ EATAV Sbjct: 2 SPLFSPYTLRSLTLPNRIVVSPMCQYSANNGAATEWHMIHLGHLALSGAGMLMIEATAVE 61 Query: 63 PEGRISSADLGLWKDEHIAPLRRITRFIEQQGAVPGV-QLAHAGRKASVLRPWVGPAASV 121 PEGRI+ DLGLW D A L + I + + V QL HAGRKAS PW G + Sbjct: 62 PEGRITPKDLGLWDDATEAALVPVLAAIRKHSKIAVVMQLGHAGRKASSKVPWEG-GQQL 120 Query: 122 PPADGGWVPQAPSALAFDTTYTQPTALTVQDIAGLVQAFAKAAQRALAAGFKVIELHGAH 181 ADGGW+ APSA++ +P AL + L AF AA+RA G +E+H AH Sbjct: 121 SVADGGWMSYAPSAVSQKEGEVEPLALDAAGLRRLRDAFVLAAKRAERLGIDGLEVHAAH 180 Query: 182 GYLGHQFLSPLSNKRDDQYGGSFENRIRFLLETVRATRAVWPDELPLLVRLSATDWAEGG 241 GYL HQFLSP++N R D+YGGS ENR+RF LE A RAV+P + P+ +R+SATDW E G Sbjct: 181 GYLLHQFLSPIANHRTDEYGGSLENRMRFPLEVFDAVRAVFPADKPVGIRVSATDWMENG 240 Query: 242 WTPEETVALSIRLRELGVDLVDVSTGGNLPAAAIPVGPGYQTGFAAQVKAQAGIATGTVG 301 W E+T+A + L++ VD +DVS+GG P I +GPGYQ FA VK G+ T VG Sbjct: 241 WNLEQTIAFAAELKKRDVDWIDVSSGGISPLQKITIGPGYQVAFAQGVKEATGVNTMAVG 300 Query: 302 MITDAIQAEHVLRTGQADLVLLARELLRDPYWPMHAAQQLRHEMAWPPQYVRAA 355 +IT+ QAE ++ +G+AD + +AR +L DP WP HAA L + PPQY R+A Sbjct: 301 LITEPQQAEEIIASGKADFIAMARGILYDPRWPWHAAAALGATVEAPPQYWRSA 354 >gi|134094653|ref|YP_001099728.1| N-ethylmaleimide reductase, FMN-linked [Herminiimonas arsenicoxydans] Length = 352 Score = 148 bits (374), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 115/351 (32%), Positives = 170/351 (48%), Gaps = 48/351 (13%) Query: 1 MSSQLFSPLTLRGLTLPNRIAVSPMCQYSATDG--LANDWHLVHLGSRAVGGAGLVLAEA 58 M++ LF+P+ + +TLPNR+ ++P+ + A G + ND + + RA AGL+L+EA Sbjct: 1 MTNHLFTPIKVGDITLPNRVIMAPLTRSRAVGGGRVPNDLMVEYYVQRA--SAGLILSEA 58 Query: 59 TAVLPEGRISSADLGLWKDEHIAPLRRITRFIEQQGAVPGVQLAHAGRKASVLRPWVGPA 118 TAV P+G + G+W DE +A +++T + + G + +QL H GR Sbjct: 59 TAVTPQGVGYADTPGIWSDEQVAGWKKVTDAVHKAGGLISLQLWHVGR------------ 106 Query: 119 ASVPPADGGWVPQAPSALAFD---------TTYTQPTALTVQDIAGLVQAFAKAAQRALA 169 S P G +P APSA+ + Y P AL + +I G+V A+ K A+ A Sbjct: 107 ISHPMFLNGELPVAPSAIQPEGHVSIVRPQVGYVTPRALELDEIPGIVAAYRKGAENAKL 166 Query: 170 AGFKVIELHGAHGYLGHQFLSPLSNKRDDQYGGSFENRIRFLLETVRATRAVWPD---EL 226 AGF +E+HGA+GYL QFL +N+R D YGGS ENR R +LE V VW L Sbjct: 167 AGFDGVEVHGANGYLLDQFLQSSTNQRTDIYGGSIENRARLMLEVVDVCIEVWGAGRVGL 226 Query: 227 PLLVRLSATDWAEGGWTPEET---VALSIRLRELGVDLVDVSTGGNLPAAAIPVGPGYQT 283 L R + D ++ TP ET VA + R + S G N +GP + Sbjct: 227 HLAPRGDSHDLSDA--TPAETFGYVAAEMGKRGIAFICARESLGENR------LGPQLKK 278 Query: 284 GFAAQVKAQAGIATGTVGMITDAIQAEHVLRTGQADLVLLARELLRDPYWP 334 F A + T A +V+ TG+AD V + + +P P Sbjct: 279 AFGGVYIANEQMTKET---------AANVIATGEADAVAFGKLFIANPDLP 320 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.134 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 716,186 Number of extensions: 28714 Number of successful extensions: 104 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 99 Number of HSP's successfully gapped: 3 Length of query: 372 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 289 Effective length of database: 726,862 Effective search space: 210063118 Effective search space used: 210063118 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)