BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3389.p (616 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094288|ref|YP_001099363.1| putative ABC transporter permea... 911 0.0 gi|134096472|ref|YP_001101547.1| putative ABC transporter [Hermi... 320 1e-88 gi|134093728|ref|YP_001098803.1| lipid ABC transporter membrane/... 303 1e-83 gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding pro... 291 8e-80 gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding pro... 257 1e-69 >gi|134094288|ref|YP_001099363.1| putative ABC transporter permease [Herminiimonas arsenicoxydans] Length = 579 Score = 911 bits (2355), Expect = 0.0, Method: Compositional matrix adjust. Identities = 459/576 (79%), Positives = 519/576 (90%) Query: 38 LRKLLPFLSPYKKQFLLAGLALIVAAAATLAVPYAFKQMIDLGFGAAGSKSASHINLYFL 97 +R LL FL PYKKQF LAG+ALIVAAAATLA+PYAF+QMIDLGFGA G IN YFL Sbjct: 1 MRGLLKFLLPYKKQFALAGIALIVAAAATLAIPYAFRQMIDLGFGANGIHDTGSINTYFL 60 Query: 98 ALFGVACVLGVATALRFYMVSWLGERVTADLRSAVYAHVVTQSPEFFETTKTGEVLSRLT 157 ALFGVAC+L +ATA RFYMVSWLGERVTAD+R+AVY+HVVTQSP+FFETT++GEVLSRLT Sbjct: 61 ALFGVACILALATAARFYMVSWLGERVTADVRNAVYSHVVTQSPQFFETTQSGEVLSRLT 120 Query: 158 ADTTLIQTLVGTSISMALRNALLFAGGMTMLFITSARLTSIIIVMLAAVVLPIVFYGRRV 217 DTTLIQTL+GTSISMALRN LLFAGG+ MLF+TS +L+SII+VML A VLPIV++GRRV Sbjct: 121 TDTTLIQTLIGTSISMALRNTLLFAGGLVMLFVTSIKLSSIILVMLIATVLPIVWFGRRV 180 Query: 218 RKLSRASQDRVADASAMAGEILNAMPTVQAFTHEEIEAHRFAQSVERAFQTAMERIRARS 277 R LSRASQDRVAD+SA+AGEILNAMPTVQAFTHE+IE+ RF+++VE AF+TAM RIRARS Sbjct: 181 RSLSRASQDRVADSSALAGEILNAMPTVQAFTHEKIESERFSKTVEDAFKTAMRRIRARS 240 Query: 278 LLTVVAILLVFGAIVFVLWLGAHAVMEGSMSGGELGQFILYASLVAGSLGALSEVMGDTQ 337 LLT++AILL+FGAIVFVLWLGAHAV++G+MSGGELGQFILY+++VAG++GALSEV+GD Q Sbjct: 241 LLTMIAILLIFGAIVFVLWLGAHAVIDGTMSGGELGQFILYSAIVAGAIGALSEVVGDAQ 300 Query: 338 RAAGATERLLDLLAAQSPVQSVLLPEKLPPRTANGAALQIDALDFHYPSRPGSASLSGFS 397 RAAGATERLL+LLA QSP+ S +P LPPR ANG++L +D + F+YPSRP + ++S FS Sbjct: 301 RAAGATERLLELLAVQSPISSPAVPLPLPPRRANGSSLALDLVSFYYPSRPLTPAISNFS 360 Query: 398 LAVQPGETVAVVGPSGAGKTTLFQLLLRFYDPQQGNIRLDGVDIRYLTLQDLRAAIGIVP 457 +A++ GETVAVVGPSGAGKT+LFQLLLRFYDPQ+G I LDGVDIR L L LR IGIVP Sbjct: 361 IAIKAGETVAVVGPSGAGKTSLFQLLLRFYDPQEGVIELDGVDIRQLDLHALRNTIGIVP 420 Query: 458 QDTVIFSANAMENIRFGRPDASDAEVIAAAQMAAAHEFIERLPNGYQCFLGERGVRLSGG 517 QDTVIFSANAMENIR+GRPDASD EVIA A+MAAAHEFI+RLP GYQ FLGERGVRLSGG Sbjct: 421 QDTVIFSANAMENIRYGRPDASDEEVIAVAKMAAAHEFIDRLPEGYQSFLGERGVRLSGG 480 Query: 518 QRQRIAIARALLKNPPLLLLDEATSALDAESERLVQSALEAAMVGRTTLVIAHRLATVQR 577 QRQRIAIARALLKNPPLLLLDEATSALDAESERLVQSALEAAMVGRTTLVIAHRLATVQR Sbjct: 481 QRQRIAIARALLKNPPLLLLDEATSALDAESERLVQSALEAAMVGRTTLVIAHRLATVQR 540 Query: 578 ADRIIVLEHGRIVETGTHAELVARNGLYAGLAALQF 613 A RIIV+EHG IVETGTHA LVA GLYA LAALQF Sbjct: 541 AHRIIVMEHGHIVETGTHASLVAAGGLYASLAALQF 576 >gi|134096472|ref|YP_001101547.1| putative ABC transporter [Herminiimonas arsenicoxydans] Length = 726 Score = 320 bits (821), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 213/587 (36%), Positives = 329/587 (56%), Gaps = 23/587 (3%) Query: 36 AALRKLLPFLSPYKKQFLLAGLALIVAAAATLAVPYAFKQMID---LGFGAAGSKSASHI 92 A+L +L F PY+ Q LL L + + AATL PY ++D + + +S + Sbjct: 135 ASLFRLWRFAKPYRGQLLLGFLLTLGSTAATLVPPYMTLPLMDNVLIPYQNGVEIDSSLV 194 Query: 93 NLYFLALFGVACVLGVATALRFYMVSWLGERVTADLRSAVYAHVVTQSPEFFETTKTGEV 152 LY LFG A + R Y+++ + ER+ ADLR+ Y H++ S E+F +TG++ Sbjct: 195 VLYLSGLFGSAVLAWGLGWARTYILALVSERIGADLRTTTYEHLLRLSLEYFGGKRTGDL 254 Query: 153 LSRLTADTTLIQTLVGTSISMALRNALLFAGGMTMLFITSARLTSIIIVMLAAVVLPIVF 212 ++R+ ++T I + + L F + M+ +T+A L SI + +LP+ F Sbjct: 255 MTRIGSETDRICVFLSLHL-------LDFFTDVLMIIMTAAILISINPWLALVTLLPLPF 307 Query: 213 YGRRVR----KLSRASQ--DRV-ADASAMAGEILNAMPTVQAFTHEEIEAHRFAQSVERA 265 + KL + DR+ + + + + + + V+AF E+ EA RF ++ + Sbjct: 308 IAWMIHVVRDKLRNGFEKIDRIWSQVTNVLADTIPGIRVVKAFAQEKREAVRFREANKHN 367 Query: 266 FQTAMERIRARSLLTVVAILLVFGAIVFVLWLGAHAVMEGSMSGGELGQFILYASLVAGS 325 + SL + LL ++ V LG V +G ++ G L F+ Y + Sbjct: 368 LAINDRVNKVWSLFSPTVTLLTEIGLLVVWALGIWQVSQGLITVGVLTAFLAYITRFYTR 427 Query: 326 LGALSEVMGDTQRAAGATERLLDLLAAQSPVQSVLLPEKLPPRTANGAALQIDALDFHYP 385 L ++S ++ TQ+AA +R+ D+L S V P L T + I + F Y Sbjct: 428 LDSMSRIVSVTQKAATGAKRIFDILDHVSSVPEATNPVHL---TNVQGKITIKNIGFRYG 484 Query: 386 SRPGSASLSGFSLAVQPGETVAVVGPSGAGKTTLFQLLLRFYDPQQGNIRLDGVDIRYLT 445 +R A + G L +QPGE + +VG SG+GK+TL L+ RFYD G I +DG+D+R + Sbjct: 485 NR---AVIRGLDLDIQPGEMIGLVGHSGSGKSTLVNLICRFYDVSDGAILVDGIDVRSIP 541 Query: 446 LQDLRAAIGIVPQDTVIFSANAMENIRFGRPDASDAEVIAAAQMAAAHEFIERLPNGYQC 505 + + R IG+V Q+ +F +NI +G+PDAS E+IAAA+ A AHEFI RLP+GY Sbjct: 542 IPEYRRNIGLVLQEPFLFFGTIADNIAYGKPDASREEIIAAARAANAHEFILRLPHGYDS 601 Query: 506 FLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQSALEAAMVGRTT 565 +GERG LSGG+RQRI+IARALL +P +L+LDEATS++D +ER +Q AL+ + GRTT Sbjct: 602 MVGERGQTLSGGERQRISIARALLIDPHILILDEATSSVDTTTEREIQKALDNLVRGRTT 661 Query: 566 LVIAHRLATVQRADRIIVLEHGRIVETGTHAELVARNGLYAGLAALQ 612 + IAHRL+T++RADRI+V++ G+IVE G+H EL+AR G Y L Q Sbjct: 662 IAIAHRLSTLRRADRIVVMDRGQIVEVGSHDELLAREGAYYKLYQAQ 708 >gi|134093728|ref|YP_001098803.1| lipid ABC transporter membrane/ATP-binding protein [Herminiimonas arsenicoxydans] Length = 581 Score = 303 bits (777), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 202/582 (34%), Positives = 307/582 (52%), Gaps = 15/582 (2%) Query: 38 LRKLLPFLSPYKKQFLLAGLALIVAAAATLAVPYAFKQMIDLGFGAAGSKSASHINLYFL 97 L++L L PYKK+ +A + +I+ A P + ++D GFG K + L L Sbjct: 7 LKRLYGMLGPYKKRLAVAFIGMIMTALTEPMFPAVMRLLLDKGFGG---KPTFSLWLVPL 63 Query: 98 ALFGVACVLGVATALRFYMVSWLGERVTADLRSAVYAHVVTQSPEFFETTKTGEVLSRLT 157 A+ G+ + G++T Y ++W+ R+ + LR ++ ++ F+ T G V++ + Sbjct: 64 AIIGIFVLRGISTFTTTYTMTWVSSRLLSTLRKKMFERILDVPLGFYGTHSVGRVINSMM 123 Query: 158 ADTTLIQTLVGTSISMALRNALLFAGGMTMLFITSARLTSIIIVMLAAVVLPIVFYGRRV 217 + I ++ + +R++L + LF + RLT + +V+L + + + F G+RV Sbjct: 124 FEVQQIIEMITKVYTSIIRDSLTVIVLLAFLFWLNWRLTLVALVLLPLIAIVVRFTGKRV 183 Query: 218 RKLSRASQDRVADASAMAGEILNAMPTVQAFTHEEIEAHRFAQSVERAFQTAMERIRARS 277 R+L+R Q A+ + + E A ++ F + E RF ++ M + Sbjct: 184 RRLTREYQAVNAEMTQVIEESTRANQVIKIFGGHQYENDRFEVRADKLRSYTMRMASTLA 243 Query: 278 LLTVVAILLVFGAIVFVLWLGAHAVMEGSMSGGELGQFILYASLVAGSLGALSEVMGDTQ 337 T V ++ A+ V+ + + + G FI ++ L ++EV G Q Sbjct: 244 ATTPVTQIMASCAVAIVIVIALIQSEQNQTTVGGFVSFITAMLMLLAPLKNIAEVNGPLQ 303 Query: 338 RAAGATERLLDLLAAQSPVQSVLLPEKLPPRTANGAA---LQIDALDFHYPSRPGSASLS 394 + A E + L+ A+ PE+ +T A L L F YP S +L Sbjct: 304 KGLTAAEAVFGLIDAK--------PERTSGKTLEARAAGKLDFINLGFSYPGHQ-SMALE 354 Query: 395 GFSLAVQPGETVAVVGPSGAGKTTLFQLLLRFYDPQQGNIRLDGVDIRYLTLQDLRAAIG 454 +L+V PGET+A VG SG GK+TL L+ FY G IRLD V I + L LR I Sbjct: 355 DINLSVLPGETIAFVGMSGGGKSTLVNLVPGFYPATVGEIRLDDVPIEEIALTSLRRQIA 414 Query: 455 IVPQDTVIFSANAMENIRFGRPDASDAEVIAAAQMAAAHEFIERLPNGYQCFLGERGVRL 514 +V Q V+F NI +G A ++AAA A + I LP G + +G+ G RL Sbjct: 415 MVSQHVVLFDDTIAANIAYGDETPDRARILAAATAAHLDDVIAGLPQGLETMIGDNGSRL 474 Query: 515 SGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQSALEAAMVGRTTLVIAHRLAT 574 SGGQRQR+AIARA+ K+ P+L+LDEATSALD+ESER VQ+AL+A M GRTTLVIAHRL+T Sbjct: 475 SGGQRQRLAIARAIYKDAPILILDEATSALDSESERAVQAALDALMKGRTTLVIAHRLST 534 Query: 575 VQRADRIIVLEHGRIVETGTHAELVARNGLYAGLAALQFETQ 616 ++RADRI VL GRIVE G+H EL+ +N +YA L LQF + Sbjct: 535 IERADRIAVLAEGRIVELGSHQELLEKNAVYANLYHLQFAKE 576 >gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 648 Score = 291 bits (744), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 212/623 (34%), Positives = 333/623 (53%), Gaps = 19/623 (3%) Query: 1 MSSTTPPRSTSHPVTH-AVTDNSPQSSSP----TARKSALAALRKLLPFLSPYKKQFLLA 55 M + T PR P + + S SS P + ++ A L+ L+P+L YK + LA Sbjct: 1 MLTATIPRQKHKPFENFSPMRRSSASSEPAPLSSGNRNDWATLKTLIPYLWTYKWRVALA 60 Query: 56 GLALIVAAAATLAVPYAFKQMID-LGFGAAGSKSASHINLYFLALFG-VACVLGVATALR 113 L LI A A + VP K++ID L A + + + L +G + + T LR Sbjct: 61 LLFLIAAKFANVGVPLVLKRLIDGLTIDPASPHALLVLPVGILFAYGALRLSTTLFTELR 120 Query: 114 FYMVSWLGERVTADLRSAVYAHVVTQSPEFFETTKTGEVLSRLTADTTLIQTLVGT---S 170 Y + + +R + V+ H+ S F +TG + + T I +LV S Sbjct: 121 EYTFAKVTQRAVRTIALQVFRHLHALSLRFHLNRQTGGMTRDIERGTRGISSLVSYTLFS 180 Query: 171 ISMALRNALLFAGGMTMLF-ITSARLTSIIIVMLAAVVLPIVFYGRRVRKLSRASQDRVA 229 I L L G + + + I + +T++ +V A + + + R R D + Sbjct: 181 ILPTLVEITLVLGYLVLHYDIWFSIITAVALVSYIAFTVVVTEWRTHFR---RTMNDLDS 237 Query: 230 DASAMAGEILNAMPTVQAFTHEEIEAHRFAQSVERAFQTAMERIRARSLLTVVAILLVFG 289 A+ A + L TV+ F +E+ EA R+ + ++R A++ + S+L ++ Sbjct: 238 KANTKAIDSLINYETVKYFGNEDYEAKRYDEGLKRYETAAVKSQTSLSVLNTGQSSIIAV 297 Query: 290 AIVFVLWLGAHAVMEGSMSGGELGQFILYASLVAGSLGALSEVMGDTQRAAGATERLLDL 349 A+ +LW V+ G+M+ G+L + + L L + + +++ ERL L Sbjct: 298 AVTLILWRATQGVISGTMTLGDLVLVNAFMIQLYIPLNFLGVIYREIKQSLADMERLFSL 357 Query: 350 LAAQSPVQSVLLPEKLPPRTANGAALQIDALDFHYPSRPGSASLSGFSLAVQPGETVAVV 409 L + + L GA ++ + F Y ++ F++A G T AVV Sbjct: 358 LDQHREIADKPNTQAL---VVQGAEVKFSHVGFSYEAKRQILFDVDFTIAA--GTTTAVV 412 Query: 410 GPSGAGKTTLFQLLLRFYDPQQGNIRLDGVDIRYLTLQDLRAAIGIVPQDTVIFSANAME 469 G SG+GK+TL +LL RFYD +G I +DG D+R +T LR AIGIVPQDTV+F+ Sbjct: 413 GHSGSGKSTLSRLLFRFYDVNEGAILIDGQDVRDVTQASLRNAIGIVPQDTVLFNDTIEY 472 Query: 470 NIRFGRPDASDAEVIAAAQMAAAHEFIERLPNGYQCFLGERGVRLSGGQRQRIAIARALL 529 NI +G+P AS +++AAA+ A H+FIE LP+GY +GERG++LSGG++QR+AIAR LL Sbjct: 473 NIAYGKPGASKDDIVAAAKSAYIHDFIESLPDGYATMVGERGLKLSGGEKQRVAIARTLL 532 Query: 530 KNPPLLLLDEATSALDAESERLVQSALEAAMVGRTTLVIAHRLATVQRADRIIVLEHGRI 589 K+P +L+ DEATSALD+++E+ +Q+ L+ RTT+VIAHRL+T+ A +I+VL+HGRI Sbjct: 533 KHPAILIFDEATSALDSKAEQAIQAQLKEIAKDRTTMVIAHRLSTIVDAAQILVLDHGRI 592 Query: 590 VETGTHAELVARNGLYAGLAALQ 612 VE GTHA+L+A +G YA + A Q Sbjct: 593 VERGTHAQLLAADGAYAQMWARQ 615 >gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 618 Score = 257 bits (656), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 182/510 (35%), Positives = 270/510 (52%), Gaps = 50/510 (9%) Query: 128 LRSAVYAHVVTQSPEFFETTKTGEVLSRLTADTTLIQTLVGTSISMALRNALLFAGG-MT 186 LR + ++ QS F++ G V T ++QT ++A+R+ + G + Sbjct: 116 LRWNFHRMMLNQSMGFYQDEFAGRVA------TKVMQT------ALAVRDVCMITGDILV 163 Query: 187 MLFITSARLTSIIIVMLAAVVLPIV----FYGRRVR----KLSRASQDRVADASAMAGEI 238 + I L S++ ++LP + YG +R +LS S+ + S M G I Sbjct: 164 FVIIYFVTLVSVVGTFNTWMMLPFLSWAAVYGLALRYFVPRLSHVSRAQADARSLMTGRI 223 Query: 239 LNA---MPTVQAFTHEEIEAHRFAQSVERAFQTAME-RIRARSLLTVV----AILLVFGA 290 +A + TV+ F+H EA +A++ + F +A+ ++R S +V ++LL+ Sbjct: 224 TDAYTNISTVKLFSHAGREAG-YARTAMQEFMSAVHGQMRLVSGFEIVNHLLSMLLILST 282 Query: 291 IVFVLWLGAHAVMEGSMSGGELGQFILY---ASLVAGSLGALSEVMGDTQRAAGATERLL 347 LWL + + + V + L E +G Q R Sbjct: 283 AGVALWLWTQGQVGVGAVAAATAMALRLNGISHWVMWEMATLFEQVGTVQDGINTLAR-- 340 Query: 348 DLLAAQSPVQSVLLPEKLPPRTANGAALQIDALDFHYPSRPGSASLSGFSLAVQPGETVA 407 +V P L+ D + F Y A + F+L ++PGE V Sbjct: 341 --------AHTVTDAADAAPLQVMRGELKFDHVGFAYGGT--RAVIDQFNLTIRPGEKVG 390 Query: 408 VVGPSGAGKTTLFQLLLRFYDPQQGNIRLDGVDIRYLTLQDLRAAIGIVPQDTVIFSANA 467 +VG SGAGK+T+ LLLRFYD +QG I +DG DI ++T LRA +G+V QDT + + Sbjct: 391 LVGRSGAGKSTIVNLLLRFYDLEQGRILIDGQDIAHVTQNSLRAQVGMVTQDTSLLHRSV 450 Query: 468 MENIRFGRPDASDAEVIAAAQMAAAHEFIERLPNG-----YQCFLGERGVRLSGGQRQRI 522 +NI +GRPDAS+A++I AA+ A AH+FI L + Y +GERGV+LSGGQRQRI Sbjct: 451 RDNILYGRPDASEADMIDAAKRAEAHDFILTLSDAKGRTAYDAHVGERGVKLSGGQRQRI 510 Query: 523 AIARALLKNPPLLLLDEATSALDAESERLVQSALEAAMVGRTTLVIAHRLATVQRADRII 582 AIAR +LK+ P+LLLDEATSALD+E E +Q++L M G+T + IAHRL+T+ DR+I Sbjct: 511 AIARVMLKDAPILLLDEATSALDSEVEAAIQTSLYELMEGKTVVAIAHRLSTIAAMDRLI 570 Query: 583 VLEHGRIVETGTHAELVARNGLYAGLAALQ 612 VL+ GRIVE G+H EL+ +NGLYA L A Q Sbjct: 571 VLDKGRIVEQGSHRELLQQNGLYARLWAHQ 600 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.134 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 955,130 Number of extensions: 35382 Number of successful extensions: 326 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 272 Number of HSP's successfully gapped: 45 Length of query: 616 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 529 Effective length of database: 713,682 Effective search space: 377537778 Effective search space used: 377537778 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)