BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3388.p
         (324 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094291|ref|YP_001099366.1| hypothetical protein HEAR1060 [...   352   1e-98

>gi|134094291|ref|YP_001099366.1| hypothetical protein HEAR1060
           [Herminiimonas arsenicoxydans]
          Length = 320

 Score =  352 bits (904), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 188/302 (62%), Positives = 220/302 (72%), Gaps = 1/302 (0%)

Query: 23  ELAAALMAPQAFIAPKYFYDALGSKLFEAICALPEYYPTRTEAAIFAAHQEAIAAAVGHG 82
           EL A L A  A+ +PK+ YDALGSKLFEAIC LPEYYPTRTEA IF+ H   IA  VG G
Sbjct: 18  ELLAGLNASCAYTSPKFLYDALGSKLFEAICELPEYYPTRTEAEIFSRHARDIAQTVGAG 77

Query: 83  CILIDLGAGNCAKAASLFEVLQPRQYVPVDISGDFLQQSVQGLQRRFAQLPMQPLVMDFS 142
             LIDLGAGNCAKAA LF  LQP QYV VDIS +FL ++V  LQ RF  + M  + MDFS
Sbjct: 78  ATLIDLGAGNCAKAARLFPQLQPAQYVAVDISVEFLHEAVSRLQHRFPAIDMVAVGMDFS 137

Query: 143 TTLDLPDTVQAEQRLFFYPGSSLGNFDARQALAFLRRLRAALPAGSND-GGVLIGLDLVK 201
           T L LP+ V+ E RLFFYPGSS+GNF   QALAFLRRL+AA        GG+LIG+DL+K
Sbjct: 138 TELVLPNGVREENRLFFYPGSSIGNFTPEQALAFLRRLQAACSQDEGGAGGLLIGVDLLK 197

Query: 202 EVAVLEAAYDDALGVTAAFNLNVLHHVNGLLGADFDPRHWRHVAFYNIHQQRIEMYLEAR 261
           E ++L+AAYDDALGVTA+FNLN+L H+N LLGADFD R WRH  F+N    RIEM+LEA 
Sbjct: 198 EKSILDAAYDDALGVTASFNLNLLLHLNRLLGADFDVRAWRHCGFFNRKLSRIEMHLEAV 257

Query: 262 RDLIVRWPGVRRTFHQGERIHTEYSHKFTEQDILSLLEQAGFGACRMWFDERRWFTVCHA 321
               VRW G  R F QGERIHTE S+K+T+QD ++LL QAGF   R W D ++WF VCHA
Sbjct: 258 TKQTVRWAGGMRCFEQGERIHTENSYKYTQQDFINLLTQAGFNNVRCWSDPQQWFMVCHA 317

Query: 322 RA 323
           + 
Sbjct: 318 QT 319


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.325    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 520,753
Number of extensions: 17368
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 242
Effective length of database: 730,157
Effective search space: 176697994
Effective search space used: 176697994
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)