BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3387.p
         (447 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094292|ref|YP_001099367.1| hypothetical protein HEAR1061 [...   460   e-131

>gi|134094292|ref|YP_001099367.1| hypothetical protein HEAR1061
           [Herminiimonas arsenicoxydans]
          Length = 416

 Score =  460 bits (1184), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 238/393 (60%), Positives = 276/393 (70%), Gaps = 25/393 (6%)

Query: 65  EDCCVQAMPEASPVKWHLAHTTWFFETFLLERFQSGFTPFHPQFRMLFNSYYEGVGEKFP 124
           EDCC Q+MP+ASP+KWHLAHT+WFFETF+LERF++ F P HP FR+LFNSYY G+G+K  
Sbjct: 37  EDCCAQSMPDASPIKWHLAHTSWFFETFILERFEANFQPHHPAFRVLFNSYYNGIGDKHA 96

Query: 125 RPQRGLLTRPSLAEVLAYRDEVDGRMLLLIDALDSGRAEAEEDHAQLADFLALLELGMQH 184
           R QRGLLTRPS AEV AYR +VD R+  L+       A+   D A       LLELG+QH
Sbjct: 97  RAQRGLLTRPSFAEVQAYRRDVDARITALL-------AQPLADAAHAEL-AGLLELGLQH 148

Query: 185 EQQHQELMFTDIKILLSMNPLQPAY--QPLPMSVCLGDPVELPLQWHRIQAGVVEIGHAG 242
           EQQHQELM TD+  LL  NPL+PAY   P P+S   G+     LQW   + GVV+IGHA 
Sbjct: 149 EQQHQELMMTDVLHLLWCNPLKPAYCASPHPVSAAAGE-----LQWQSFKGGVVQIGHAD 203

Query: 243 SGFCFDNERPRHRQFVEAYQCASRLVNNAEYLAFVEAGGYEDAALWLSEGWEWKQQLALA 302
           +GFCFDNE P HRQF+E Y  ASRLV N EYLAFV+AGGY++ A WLSEGW+W Q   L 
Sbjct: 204 TGFCFDNEMPAHRQFIEPYALASRLVTNREYLAFVDAGGYQNPAWWLSEGWDWVQTQQLT 263

Query: 303 HPLYWRPVADNQWQEFTEYGMQPLQPHRAAQHLSYYEADAYARWAGARLLTEAEWEHAAA 362
            PLYWR       Q F  +G+Q L P  AA H+SY+EADAYARW GARL TEAEWEHAA 
Sbjct: 264 QPLYWRTDDTAARQVFGLHGLQSLDPDAAATHISYFEADAYARWTGARLPTEAEWEHAAM 323

Query: 363 H----------LQGQGREFFGVAWQWTSSSYAPYPGFVAAPGAVGEYNGKFMVNQYVLRG 412
                         + ++ F   WQWTSSSYAPYPG+  A GA+GEYNGKFM NQYVLRG
Sbjct: 324 QSSAAGATARHAATELKQLFATCWQWTSSSYAPYPGYATAAGALGEYNGKFMSNQYVLRG 383

Query: 413 SSSATPLNHARLSYRNFFPATARWQVSGIRLAR 445
           SS  TP  H+R +YRNFFPATARWQ SGIRLAR
Sbjct: 384 SSCVTPEGHSRATYRNFFPATARWQFSGIRLAR 416


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.135    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 877,093
Number of extensions: 37333
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 362
Effective length of database: 720,272
Effective search space: 260738464
Effective search space used: 260738464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)