BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3386.p (586 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 441 e-125 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 420 e-119 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 405 e-114 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 399 e-112 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 358 e-100 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 441 bits (1135), Expect = e-125, Method: Compositional matrix adjust. Identities = 276/588 (46%), Positives = 375/588 (63%), Gaps = 29/588 (4%) Query: 1 MRFNNFSISTRLALAFSILILVIAAIVTLGLARLSDINQSLDLVVNDRYKKIAIINTISG 60 M+F N I RL +AF +L++++A + +G+ RL D+ ++ L+ K+ I G Sbjct: 1 MQFKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKATVLMEEATIKERLAQQWIKG 60 Query: 61 KVDDVAISLRNELLMTNPEQIANEQKIIEALSAENTKLYDELTRLIADPEAKAKLTQVTE 120 ++ + + ++PEQ Q+ + A+SA +K DEL L+ E K L V E Sbjct: 61 -IETNTVRTFARVRTSDPEQDKILQQEMSAISAAVSKQQDELETLVVSAEGKKLLATVAE 119 Query: 121 TRKKYAAMRKEIDRLFTS--GEKDAAIKLMLSQMVPLQKIYFGQLDELANMQQKLMDKSV 178 R Y A+R ++ L + E AI ++M P Y ++ + N Q + + Sbjct: 120 KRATYTAIRDDVMNLREARGAELQNAIA---NKMKPAADAYIQSVEAVVNAQINNFEDAK 176 Query: 179 EEAEATYLATRNIMLASGVLAALFAGFVAWTISRSITRPLSRAVEVAETVAAGDLTAVIT 238 + Y + R +++ G++A +AW ++RSIT+PL AV VA VA+GDLT IT Sbjct: 177 GRVDTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARLVASGDLTGRIT 236 Query: 239 AHSTDETGRLLQALAAMNQKLKAIVLEVRHSTDSMVTASTQIATGNLDLSSRTEEQASAL 298 S DETG+LLQAL MN L A + +VR D++ TAS QIA+GNLDLSSRTEEQAS+L Sbjct: 237 VDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSL 296 Query: 299 EETASSLEQLTSSVKQNADHTRKSSELAGTATAVANQGGEAVKQVVQTMGAINDSSRKIV 358 EETASS+E+LTS+VKQNAD+ R++++LA TA+ VA +GG V +VV TM IN S+RKIV Sbjct: 297 EETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIV 356 Query: 359 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSATAAKEIKELIN 418 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEIK LI+ Sbjct: 357 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLID 416 Query: 419 DSVNQVSSGTELVAQAGNTMDQVVNSIEQVGHIVGEISAATREQSDGIEQVNQAIMQMDN 478 DSV++V +G++LVA+AG TM +VV+S+++V I+ EI AA++EQS GIEQVNQAI QMD Sbjct: 417 DSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQ 476 Query: 479 TTQQNAALVEEAAAAAQALQDQAQRLLELVSVFRLDDAGGPELRTMQAPQAAALKSSAVT 538 TQQNAALVEEAAAAA++L +QA L + VS+F+LD SS V Sbjct: 477 VTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKLDGVA---------------NSSRVA 521 Query: 539 SKALPSKPQTQPQPQAQSARPAAIGANQAPRALPNSIKEDKKEEWESF 586 ++ LP P + +A P AP+ + N + ++WE F Sbjct: 522 TR-LPVAASNAPATRQFAASP-------APKKIANETRPVSGDDWEEF 561 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 420 bits (1080), Expect = e-119, Method: Compositional matrix adjust. Identities = 272/530 (51%), Positives = 362/530 (68%), Gaps = 6/530 (1%) Query: 1 MRFNNFSISTRLALAFSILILVIAAIVTLGLARLSDINQSLDLVVNDRYKKIAIINTISG 60 M+ N I RL LAF++++L++A+++ +G+ RL ++ Q+ + ++ I +G Sbjct: 1 MKITNLKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQATVRMEEAAEQERLSIQWHAG 60 Query: 61 KVDDVAISLRNELLMTNPEQIANEQKIIEALSAENTKLYDELTRLIADPEAKAKLTQVTE 120 + AI + TN E Q + A S E TKL ++L LI E K ++ V + Sbjct: 61 NSAN-AIRTTARIRSTNQEVQQQFQNEMTAQSVEITKLQNKLESLIHSEEGKKLMSAVGD 119 Query: 121 TRKKYAAMRKEIDRLFTSGE---KDAAIKLMLSQMVPLQKIYFGQLDELANMQQKLMDKS 177 R Y +RKE+ +L G ++ A K++ S+M P + Y + ++ + QQ ++ Sbjct: 120 KRTVYMDIRKEVFKLKADGSPAAEEEAKKIIASKMDPALETYSKTVQDVVDFQQVTFLEA 179 Query: 178 VEEAEATYLATRNIMLASGVLAALFAGFVAWTISRSITRPLSRAVEVAETVAAGDLTAVI 237 E + Y + R +L G +A + +AW +SRSITRPL AVEVA TVA GDL I Sbjct: 180 KTEVDNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPLEYAVEVARTVAGGDLRNRI 239 Query: 238 TAHSTDETGRLLQALAAMNQKLKAIVLEVRHSTDSMVTASTQIATGNLDLSSRTEEQASA 297 +S+DETG+LLQAL MN L V EVR +++ TAS QIA GNLDLSSRTEEQAS+ Sbjct: 240 EVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLSSRTEEQASS 299 Query: 298 LEETASSLEQLTSSVKQNADHTRKSSELAGTATAVANQGGEAVKQVVQTMGAINDSSRKI 357 LEETASS+E+LTS+VKQNAD+ R++++LA +A+ VA +GG V QVV TM IN S++KI Sbjct: 300 LEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTMEDINSSAKKI 359 Query: 358 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSATAAKEIKELI 417 VDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AAKEIK LI Sbjct: 360 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLI 419 Query: 418 NDSVNQVSSGTELVAQAGNTMDQVVNSIEQVGHIVGEISAATREQSDGIEQVNQAIMQMD 477 DSV++V G++LVA+AG TM++VVNS+++V I+ EI AA++EQS GIEQVNQAI QMD Sbjct: 420 GDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIEQVNQAIGQMD 479 Query: 478 NTTQQNAALVEEAAAAAQALQDQAQRLLELVSVFRLDD--AGGPELRTMQ 525 TQQNAALVEEAAAAA++L +QA +L E VSVF+LD A P +T++ Sbjct: 480 QVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLDGVAASTPATKTVR 529 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 405 bits (1041), Expect = e-114, Method: Compositional matrix adjust. Identities = 267/560 (47%), Positives = 370/560 (66%), Gaps = 29/560 (5%) Query: 1 MRFNNFSISTRLALAFSILILVIAAIVTLGLARLSDINQSLDLVVNDRYKKIAIINTISG 60 MR N I TRL L F +++L++AA+ G+ RL +IN + +V+D +++ + Sbjct: 1 MRIANMKIGTRLGLGFGLILLLVAAMGATGIMRLENINGASRHLVDD---SLSMQKSAQN 57 Query: 61 KVDDVAISLRNELLM---TNPEQIANEQKIIEALSAENTKLYDELTRLIADPEAKAKLTQ 117 + +++ L + ++PE QK I A S + T++ + I + K + Sbjct: 58 WLLGTSVNASRTLALVKASDPESQEFFQKAITAQSKQITEIQKSIEDRINSDKEKELFAE 117 Query: 118 VTETRKKYAAMRKEIDRLFTSGEKDAAIKLMLSQMVPLQKIYFGQLDELANM------QQ 171 V + R Y +RK I + G A +++ ++MVP Y +D + N+ + Sbjct: 118 VAKKRSAYIDIRKSILGVKAGGNIAEANQMIDTKMVPALDAY---VDSVKNVLGHYENEV 174 Query: 172 KLMDKSVEEAEATYLATRNIMLASGVLAALFAGFVAWTISRSITRPLSRAVEVAETVAAG 231 KL D+S+ + YL+ R ++ V+A L +AW ++ ITRPL A++VAE+VA G Sbjct: 175 KLADESITD---DYLSGRMALIIGAVIAILLGTLIAWRLTVGITRPLHEALKVAESVAEG 231 Query: 232 DLTA-VITAHSTDETGRLLQALAAMNQKLKAIVLEVRHSTDSMVTASTQIATGNLDLSSR 290 DLTA A + DE G LL AL M L V ++R TD++ TAS++IA+GNLDLSSR Sbjct: 232 DLTARSDMAETQDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSR 291 Query: 291 TEEQASALEETASSLEQLTSSVKQNADHTRKSSELAGTATAVANQGGEAVKQVVQTMGAI 350 TE+QAS+LEETASS+E+LTS+VKQNAD++R++++LA A+ VA +GG V QVV TMGAI Sbjct: 292 TEQQASSLEETASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAI 351 Query: 351 NDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSATAA 410 N+S++KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSA AA Sbjct: 352 NNSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAA 411 Query: 411 KEIKELINDSVNQVSSGTELVAQAGNTMDQVVNSIEQVGHIVGEISAATREQSDGIEQVN 470 KEIK LI DSV +V +G++LVA+AG TMD++V+ +++V I+ EI+AA++EQSDGIEQVN Sbjct: 412 KEIKTLIGDSVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVN 471 Query: 471 QAIMQMDNTTQQNAALVEEAAAAAQALQDQAQRLLELVSVFRLDDAGGPELRTMQAPQAA 530 QA+ QMD TQQNAALVEEAAAAA++LQDQA+ L E VSVFR+ G T Q+ Sbjct: 472 QAVSQMDQVTQQNAALVEEAAAAAESLQDQARNLAEAVSVFRV----GSGYATAQSAAPR 527 Query: 531 ALKSSAVTSKALPSKPQTQP 550 ++S+A+ KP P Sbjct: 528 TVQSTAM------HKPLAAP 541 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 399 bits (1025), Expect = e-112, Method: Compositional matrix adjust. Identities = 276/606 (45%), Positives = 379/606 (62%), Gaps = 57/606 (9%) Query: 3 FNNFSISTRLALAFSILILVIAAIVTLGLARLSDINQSLDLVVNDRYKKIAIINTISGKV 62 N +I + L IL L++ A LGL L N++L V DR I +NT+ Sbjct: 2 LKNITIKSLLLFVMGILSLLLIATGILGLTSLDTTNKALRSVYEDRTVPIGQLNTV---- 57 Query: 63 DDVAISLRNEL-----LMTNPEQIANEQKIIEALSAENTKLYDELTRLIADPEAKAKLTQ 117 + +S N+L + +P + + IE S E + +D PEAK Sbjct: 58 --ITLSTINQLDLAASIYGDPGLVIPKMDAIEKHSKEINQAFDAFMASTLTPEAKV---- 111 Query: 118 VTETRKKYAAMRKEIDRLFTSGEKDAAIK-------LMLSQMV--PLQKIYF---GQLDE 165 K+AA RK +F AI L ++++V P++++ + Sbjct: 112 ---LADKFAADRK----IFLEKALQPAIAASRGGNVLRVTEIVNGPMEELITPVRAGVAA 164 Query: 166 LANMQQKLMDKSVEEAEATYLATRNIMLASGVLAALFAGFVAWTISRSITRPLSRAVEVA 225 L +++ + K+ EE++ ++ RNI + + + L AGF+A+ + R I RPL AV++A Sbjct: 165 LIDLELREAKKAFEESQTRFVMVRNISIGAIIFGVLLAGFMAFWLIRLIARPLHDAVQIA 224 Query: 226 ETVAAGDLTAVITAHSTDETGRLLQALAAMNQKLKAIVLEVRHSTDSMVTASTQIATGNL 285 +VAAGDLT I +ST+ETG+LLQAL MN L V VR T+++ AS +IA+GN Sbjct: 225 RSVAAGDLTQQIHVNSTNETGQLLQALKDMNDSLSKTVSAVRRGTETITVASGEIASGNA 284 Query: 286 DLSSRTEEQASALEETASSLEQLTSSVKQNADHTRKSSELAGTATAVANQGGEAVKQVVQ 345 DLSSRTE QA +LEETASS+E+LTS+V+QNAD+ R++++L +AT VA +GG V +VV Sbjct: 285 DLSSRTEAQAGSLEETASSMEELTSTVRQNADNARQANQLVVSATEVAVKGGSVVSEVVI 344 Query: 346 TMGAINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQR 405 TMG+I DSSRKIVDII VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQR Sbjct: 345 TMGSIKDSSRKIVDIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQR 404 Query: 406 SATAAKEIKELINDSVNQVSSGTELVAQAGNTMDQVVNSIEQVGHIVGEISAATREQSDG 465 SA AAKEIK LI+DSV++V +G++LV QAG+TM ++V S++ V I+ EI++A++EQSDG Sbjct: 405 SAGAAKEIKALIDDSVHKVDAGSKLVDQAGSTMQEIVTSVKHVADIMSEITSASQEQSDG 464 Query: 466 IEQVNQAIMQMDNTTQQNAALVEEAAAAAQALQDQAQRLLELVSVFRLDDAGGPELRTMQ 525 IEQVNQAI QMD TQQNAALVE+AAAAAQ++QDQA L V++F+L DAGG + T Sbjct: 465 IEQVNQAISQMDEMTQQNAALVEQAAAAAQSMQDQAVELSGAVAIFKL-DAGGSAMSTSA 523 Query: 526 APQ--AAALKSS--AVTSKALPSKPQTQPQPQAQSARPAAIGANQAPRALPNSIKEDKK- 580 + + A AL+++ A TS+AL + P Q + + Q +P I DK Sbjct: 524 STRRAAPALQAANPATTSRALTAAPHKQLETKPQ--KP---------------ISADKSG 566 Query: 581 EEWESF 586 ++WE F Sbjct: 567 DDWEEF 572 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 358 bits (919), Expect = e-100, Method: Compositional matrix adjust. Identities = 250/599 (41%), Positives = 355/599 (59%), Gaps = 61/599 (10%) Query: 3 FNNFSISTRLALAFSILILVIAAIVTLGLARLSDINQSLDLVVNDRYKKIAIINTISGKV 62 N SI RL L + +++ +G+ + N +L + ++ I+++ ++ Sbjct: 2 LKNISIKFRLLLTMVFMGMMLIVGGAMGILGVQTTNNTLQNIYVNQMPSSEAIHSMMTRL 61 Query: 63 DDVAISLRNELLMTNPEQIANEQKIIEALSAENTKLY--DELTRLIADP----EAKAKLT 116 L L+ P + +E +I++ AEN L +E + ++ P E + Sbjct: 62 LQARAGL--NLVAMRPHEEGSE-RILK--RAENFYLQSEEEWKKYLSLPIETLEERKVAD 116 Query: 117 QVTETRKKY---------AAMRKEIDRLFTSGEKDAAIKLMLSQMVPLQKIYFGQLDELA 167 +VT R +Y AA+R +G + +++++M PL + DEL Sbjct: 117 EVTAKRIRYLKEAEQGLIAALR--------AGRNEEVEDILVNKMPPLFQSLTKSTDELV 168 Query: 168 NMQQKLMDKSVEEAEATYLATRNIMLASGVLAALFAGFVAWTISRSITRPLSRAVEVAET 227 +Q K ++++ + R I + +L + A+ + R+IT PL + +T Sbjct: 169 ELQMKSAATGYQDSQTLFHYFRIIAVVGVLLGLIGVAIYAFFLIRAITGPLKEMLLHFDT 228 Query: 228 VAAGDLTAVITAHSTDETGRLLQALAAMNQKLKAIVLEVRHSTDSMVTASTQIATGNLDL 287 +A+GDLT+ I S +E G L+ L M ++L V +VR + ++ TA+T+IA GNLDL Sbjct: 229 IASGDLTSNIEVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDL 288 Query: 288 SSRTEEQASALEETASSLEQLTSSVKQNADHTRKSSELAGTATAVANQGGEAVKQVVQTM 347 SSRTE+QA++LEETASS+E+LTS+VKQN D+ R++++LA +A+AVA +GG V VV TM Sbjct: 289 SSRTEQQAASLEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTM 348 Query: 348 GAINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSA 407 AIN S+RKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA Sbjct: 349 DAINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA 408 Query: 408 TAAKEIKELINDSVNQVSSGTELVAQAGNTMDQVVNSIEQVGHIVGEISAATREQSDGIE 467 AAKEIK LI+DSVN+V +GT LVA+AG TM +VV+S+++V I+ EI AA++EQS GIE Sbjct: 409 AAAKEIKHLIDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIE 468 Query: 468 QVNQAIMQMDNTTQQNAALVEEAAAAAQALQDQAQRLLELVSVFRLDDAGGPELRTMQAP 527 QVN AI+QMD TQQNAALVE+AAAAA +L+DQA L +VSVF+L Q Sbjct: 469 QVNTAIVQMDEVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKL-----------QGH 517 Query: 528 QAAALKSSAVTSKALPSKPQTQPQPQAQSARPAAIGANQAPRALPNSIKEDKKEEWESF 586 Q+A P Q +P+A +RPAAI + +WE F Sbjct: 518 QSA------------PQNLVPQARPKALESRPAAIA----------HTGKGNDGDWEQF 554 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.311 0.124 0.316 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 748,865 Number of extensions: 22797 Number of successful extensions: 220 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 159 Number of HSP's successfully gapped: 14 Length of query: 586 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 499 Effective length of database: 713,682 Effective search space: 356127318 Effective search space used: 356127318 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)