BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3375.p
         (605 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095504|ref|YP_001100579.1| oligopeptide ABC transporter pe...   889   0.0  

>gi|134095504|ref|YP_001100579.1| oligopeptide ABC transporter
           periplasmic substrate-binding protein [Herminiimonas
           arsenicoxydans]
          Length = 599

 Score =  889 bits (2297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/597 (70%), Positives = 493/597 (82%)

Query: 9   KLFLSCLLGATLAHGIPAAAEHAFSLYDTPKYGPGFTHFDYVNPDAPKRGTLYLANPDRR 68
           K   S LL   L+ G  A A HAFSLYDTP+Y  GFTHFDYVNPDAPK G L+LANPDRR
Sbjct: 3   KSLFSFLLICFLSQGGSAFAAHAFSLYDTPRYPAGFTHFDYVNPDAPKGGELFLANPDRR 62

Query: 69  TSFDKFNPFSLKGVAAAGVEPFMFETLAVGSADEVASMYGLLADDMVLAPDRRSMRFHLN 128
           TSFDKFNPFS+KGV+AAGV   MFETLAVGS+DE+A+MYGLLADDMVLAPDR SM F LN
Sbjct: 63  TSFDKFNPFSMKGVSAAGVSNLMFETLAVGSSDEIATMYGLLADDMVLAPDRMSMTFRLN 122

Query: 129 PKARFNNGDPVTAADVKYSFDTLMTKGAPQFKSVFADVERCVVIDPMTVRFDFKNDNREL 188
           P+ARFNNGDPV AADVKYSFDTL+ KGAPQFKS+FA+V++CVV++  TVRFDFK+ N EL
Sbjct: 123 PRARFNNGDPVLAADVKYSFDTLIAKGAPQFKSIFAEVKQCVVLNERTVRFDFKSLNHEL 182

Query: 189 PLIVGGLPVFSPKWGAGTPFDRIQLTAPIASGPYAIESYDLGRSIVYRRRADYWGNDLPS 248
           PLIVGG+PVFS KW AGT FD+IQLT PIA+GPY I+ YD GR+I Y+    YWG D+PS
Sbjct: 183 PLIVGGVPVFSRKWAAGTDFDQIQLTPPIATGPYLIDRYDSGRAISYKLNPGYWGTDIPS 242

Query: 249 RRGMYNFARIAYRFYKDDLARLEAFKAGEFDVTVEYSAKNWVRGYTGPKFANGEIIKHAF 308
           R+GM+NF RI YRFYKDD+ARLEAFKAGEFD+ VEYSAKNW R Y GPKF++GEIIK   
Sbjct: 243 RKGMFNFGRINYRFYKDDVARLEAFKAGEFDLVVEYSAKNWARSYKGPKFSSGEIIKREL 302

Query: 309 PHHNGANMQGFVMNLRRPQFQDPRVRRALGLALDFQWMNRQLFYDQYTRVDSYFANSELA 368
            H NGA MQGFVMNLRRPQFQD RVRRAL LALDF+WMNRQLF+  Y R+ S+F NS +A
Sbjct: 303 THSNGAGMQGFVMNLRRPQFQDVRVRRALDLALDFEWMNRQLFFGSYKRIYSFFNNSPMA 362

Query: 369 ATGTPSAEELKLLEPLRAQLPAAVFGPVPAQPDTNPPGSLRANLMQARQLFREAGWTYRD 428
           AT  PSA+EL LLEPLR++L   VFGP P  P T+PP SLR NL++A +LFR+AGWTYRD
Sbjct: 363 ATSLPSADELALLEPLRSKLDPVVFGPAPVPPSTDPPRSLRGNLLEAVELFRQAGWTYRD 422

Query: 429 GALRNDKGQVFHMEILDDQPAMSRVISIYVRNLEKLGVRVNQRTVDYALAQKLLENFEFD 488
           GALRNDKG+ F  EI+DDQ A+SRVIS+YVRNL+KLG++V QRT DYAL QK +E F+FD
Sbjct: 423 GALRNDKGEPFAFEIMDDQSALSRVISVYVRNLQKLGIQVTQRTADYALVQKRMEEFDFD 482

Query: 489 MTSLAIPATNSPGSEMFDIFGSRAADESGSNNVWGLKNPAVDQLIGKVVAARSRAELLTA 548
           MTS+  P  +SPG+EMFD+FGSRAADE GSNN WGLK+PAVD+L+ K+VAA SR +L+ A
Sbjct: 483 MTSIRFPDVSSPGNEMFDMFGSRAADEKGSNNAWGLKDPAVDRLVEKLVAADSRRQLVAA 542

Query: 549 THALDRVLLNLYITVPHWYSSTHRMAYRNRFGIPAVLPKYYEANPFVVSMWWEEKPR 605
             ALDRVLL+ +I V HWYSSTHR+AYR+RFGIPA  P YY+A+P+V+S WWE K R
Sbjct: 543 ARALDRVLLHKHIVVTHWYSSTHRVAYRDRFGIPATAPLYYQADPYVISSWWERKAR 599


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,244,739
Number of extensions: 55103
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 518
Effective length of database: 713,682
Effective search space: 369687276
Effective search space used: 369687276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)