BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3374.p
         (351 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095503|ref|YP_001100578.1| oligopeptide ABC transporter me...   566   e-163
gi|134096446|ref|YP_001101521.1| peptide ABC transporter membran...   123   1e-29

>gi|134095503|ref|YP_001100578.1| oligopeptide ABC transporter
           membrane protein [Herminiimonas arsenicoxydans]
          Length = 339

 Score =  566 bits (1460), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 281/339 (82%), Positives = 307/339 (90%), Gaps = 1/339 (0%)

Query: 14  MIPTLLGVIAITFAVIQFVPGGPVEQMVQELRGR-SGVHESAGGGGAYRGRQGVDPERVK 72
           M+PTLLGV+AITFAVIQFVPGGPVEQ + EL+G+      + GG   YRGRQG+D ERV 
Sbjct: 1   MLPTLLGVVAITFAVIQFVPGGPVEQALMELKGQVGAGEATGGGASQYRGRQGIDAERVA 60

Query: 73  EIKALYGFDKPPLERFWLMLKGFATFDLGRSFYHHADVWALVKSKMPVSISIGLWTFFIT 132
           EIKALYGFDKP  ERFW MLKGFATFDLG+SFYHH DVW LV SK+PVSI++GLWTFF+T
Sbjct: 61  EIKALYGFDKPASERFWQMLKGFATFDLGKSFYHHKDVWDLVVSKLPVSITLGLWTFFLT 120

Query: 133 YLISVPLGIAKAVRAGSRFDSITSAVVLVGYSIPGFVLGVFLLVVFGGGSFLQWFPLRGL 192
           Y ISVPLGIAKAVR GSRFD+ITS +VLVGYSIPGF+LGVFLLV+FGGGSF+QWFPLRGL
Sbjct: 121 YFISVPLGIAKAVREGSRFDAITSMMVLVGYSIPGFILGVFLLVMFGGGSFVQWFPLRGL 180

Query: 193 TSDNWEQLSWFGKISDYLWHITLPIIASVAGAFATMTMLTKNTFLEEIRKQYVLTARAKG 252
           TSD+WEQLS  GK+ DYLWHITLP+ ASVAG+FA MTMLTKNTFL+EIRKQYVLTARAKG
Sbjct: 181 TSDDWEQLSLLGKVLDYLWHITLPVTASVAGSFAVMTMLTKNTFLDEIRKQYVLTARAKG 240

Query: 253 LSERRVLYKHVFRNALIPLVTGFPAAFIGAFFAGSLLIETLFSLDGLGLLSYESVLRRDY 312
           LSE  VLYKHVFRNALIPLVTGFPAAFIGAFFAGSLLIETLFSLDGLGLLSYESV+RRDY
Sbjct: 241 LSENAVLYKHVFRNALIPLVTGFPAAFIGAFFAGSLLIETLFSLDGLGLLSYESVIRRDY 300

Query: 313 PVVMGTLYLFTLIGLVVKLIGDLCYVWVDPRVQFESLAK 351
           PVVMGTLYLFTLIGLVVKL+GDLCYVW DPR+QFESL +
Sbjct: 301 PVVMGTLYLFTLIGLVVKLLGDLCYVWADPRLQFESLNR 339


>gi|134096446|ref|YP_001101521.1| peptide ABC transporter membrane
           protein [Herminiimonas arsenicoxydans]
          Length = 307

 Score =  123 bits (309), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 149/282 (52%), Gaps = 7/282 (2%)

Query: 69  ERVKEIKALYGFDKPPLERFWLMLKGFATFDLGRSFYHHADVWALVKSKMPVSISIGLWT 128
           ER + I A +G DKP  +++++ ++   + DLGRSF       AL+  ++P ++ + +  
Sbjct: 28  ERARTIAA-FGLDKPLWQQYFIFIQQALSGDLGRSFSFGTPALALILERLPATLELAIGA 86

Query: 129 FFITYLISVPLGIAKAVRAGSRFDSITSAVVLVGYSIPGFVLGVFLLVVFGGGSFLQWFP 188
             I  ++ +PLG+   +R  S       A+ ++G+S+P F +G+ L++VF     L W P
Sbjct: 87  ILIAIVLGIPLGLWAGLRPHSWSGKSIMAISILGFSLPTFWVGLMLIMVFAVQ--LGWLP 144

Query: 189 L--RGLTSDNWEQLSWFGKISDYLWHITLPIIASVAGAFATMTMLTKNTFLEEIRKQYVL 246
              RG TS  +     F  + D L H+ LP         A +  LT+    E + + YV 
Sbjct: 145 SGGRGETSLLFGVPVSFLTL-DGLQHLLLPAFNLALFNIALVIRLTRAGAQEALLQDYVK 203

Query: 247 TARAKGLSERRVLYKHVFRNALIPLVTGFPAAFIGAFFAGSLLIETLFSLDGLGLLSYES 306
            ARAKG+   R++  HV +N LIP+VT     F G+  A +++ E++F+  G+G L  +S
Sbjct: 204 FARAKGVRNSRIIGVHVLKNILIPIVTVIALQF-GSIIAFAIVTESVFAWPGMGKLIIDS 262

Query: 307 VLRRDYPVVMGTLYLFTLIGLVVKLIGDLCYVWVDPRVQFES 348
           +   D PV++  L L   + +++ LI D+ Y  +DPRV+   
Sbjct: 263 IRVLDRPVIVAYLMLVVALFILINLIVDVAYSLLDPRVRLTD 304


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.144    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 586,312
Number of extensions: 20594
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 2
Length of query: 351
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 268
Effective length of database: 726,862
Effective search space: 194799016
Effective search space used: 194799016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)