BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3373.p
         (355 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095502|ref|YP_001100577.1| oligopeptide ABC transporter me...   531   e-152
gi|134096445|ref|YP_001101520.1| peptide ABC transporter [Hermin...   136   1e-33

>gi|134095502|ref|YP_001100577.1| oligopeptide ABC transporter
           membrane protein [Herminiimonas arsenicoxydans]
          Length = 354

 Score =  531 bits (1368), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 269/353 (76%), Positives = 311/353 (88%)

Query: 3   SVSLSSMPTTSSTPSISPGRRIWLRFRANRTGYWSLLIFSVLFVLSLGAELFSNDKPLVA 62
           + ++SS        S+SPGRR+WLRF+ NR GYWSL+IFS+L  +SL AEL SNDKPLVA
Sbjct: 2   NATVSSTAAVPGAKSVSPGRRVWLRFKKNRRGYWSLIIFSILVAISLLAELVSNDKPLVA 61

Query: 63  SYQGHIIFPMFKDYSDKSFGGDFDTPADYLDPFIQDQFKKNGNWALYPLNRYNHETLNYF 122
            Y G  +FP+F  YS+K FGGDF++ ADYLDPFIQ+QF+K+GNWA+YPLNRY+ +TLNYF
Sbjct: 62  RYNGEWVFPVFTTYSEKKFGGDFESQADYLDPFIQEQFRKDGNWAIYPLNRYHFDTLNYF 121

Query: 123 AKSPNPAPPSADNWLGTDDRGRDVFARLLYGFRLSVLFGLALTAIGVVLGVLAGAIQGYF 182
           A SPNPAPPSA+NWLGTDDRGRDV ARLLYGFR+SVLFGLALT  GV+LG+L GAIQGYF
Sbjct: 122 ATSPNPAPPSAENWLGTDDRGRDVVARLLYGFRVSVLFGLALTFTGVLLGLLTGAIQGYF 181

Query: 183 AGRTDLVIQRLLEIWGSMPELYLLIIFFSIFQPSLLVLLVLMAAFGWMDLADYLRAEFLR 242
           AG+TDL  QR +EIWGSMPELYLLIIF SIFQPS+ +LL+L++ FGWM L+DY+RA+FLR
Sbjct: 182 AGKTDLFFQRFMEIWGSMPELYLLIIFASIFQPSIGLLLILLSLFGWMGLSDYVRADFLR 241

Query: 243 NRNLDYVQAARAMGLSNRQIIWRHVLPNSMTTVVTFLPFRMSASILALTSLDFLGLGVPP 302
           NRNL+YVQAARA+GLSN QIIWRH+LPNS+T VVTFLPFRMS +ILALTSLDFLGLGVP 
Sbjct: 242 NRNLEYVQAARALGLSNAQIIWRHILPNSLTPVVTFLPFRMSGAILALTSLDFLGLGVPA 301

Query: 303 STPSLGELLSQGKNNLDAWWIALSTFLVLTVTLLLLTNIGDALRNALDVRRKA 355
           ST SLGELL+QGKNNLDAWWIALSTF+VLTV LLLLTNIGDALRN+LDVRRKA
Sbjct: 302 STASLGELLAQGKNNLDAWWIALSTFVVLTVMLLLLTNIGDALRNSLDVRRKA 354


>gi|134096445|ref|YP_001101520.1| peptide ABC transporter
           [Herminiimonas arsenicoxydans]
          Length = 297

 Score =  136 bits (343), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 144/249 (57%), Gaps = 6/249 (2%)

Query: 110 PLNRYNHETLNYFAKSPNPAPPSADN----WLGTDDRGRDVFARLLYGFRLSVLFGLALT 165
           P N Y+   ++       P   + D      LGTD++GRD+ + +LYG R+S++ G+A T
Sbjct: 45  PQNPYDLTQIDIMDSRLAPGAQNLDGSFTYLLGTDEQGRDMLSAILYGVRISIIVGVAST 104

Query: 166 AIGVVLGVLAGAIQGYFAGRTDLVIQRLLEIWGSMPELYLLIIFFSIFQPSLLVLLVLMA 225
           AI +++G+  G   GYF GRT+  I R+ +I  S P + + +I  ++  P +  +++ + 
Sbjct: 105 AIALLIGLTLGLCAGYFGGRTEGFIMRVADIQLSFPPILVALILLALMGPGIDKIVIALI 164

Query: 226 AFGWMDLADYLRAEFLRNRNLDYVQAARAMGLSNRQIIWRHVLPNSMTTVVTFLPFRMSA 285
           A  W   A   R+  L  R  +Y++AAR +GLS  +I++RH+LPN +  ++     ++++
Sbjct: 165 AVQWAYYARTARSAALVERKKEYMEAARGLGLSPLRIVFRHLLPNCLPPLIVIAALQVAS 224

Query: 286 SILALTSLDFLGLGVPPSTPSLGELLSQGKNNL--DAWWIALSTFLVLTVTLLLLTNIGD 343
           +I    +L FLGLG+P + PSLG L++ G + +    +WI++   + L +T++ +  + D
Sbjct: 225 AISLEATLSFLGLGLPVTEPSLGLLIANGFDYMMSGKYWISVFPGIALLLTVVSINLVAD 284

Query: 344 ALRNALDVR 352
            LR+ L+ R
Sbjct: 285 QLRDVLNPR 293


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.325    0.140    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 619,109
Number of extensions: 25606
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 2
Length of query: 355
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 272
Effective length of database: 726,862
Effective search space: 197706464
Effective search space used: 197706464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)