BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3372.p (529 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter AT... 728 0.0 gi|134096444|ref|YP_001101519.1| oligopeptide ABC transporter AT... 223 3e-59 gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter AT... 190 1e-49 gi|134095759|ref|YP_001100834.1| ribosome-associated ATPase [Her... 139 2e-34 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 125 5e-30 >gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 534 Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/523 (71%), Positives = 436/523 (83%) Query: 5 LLEVKELTVRFGDTVVVDRVSFAIAPGEKFALVGESGSGKTVSSLAVLQLNQDARYEGSI 64 LLE++ L V F + VV+ VSF+IA GEKFALVGESGSGKTV++L++L+LNQDA Y G I Sbjct: 3 LLEIQNLQVSFDTSKVVNDVSFSIAAGEKFALVGESGSGKTVTALSILRLNQDAAYAGRI 62 Query: 65 LLDGQDVLKKSERQMQQVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMHHEGISAREAA 124 L +GQD+L++SE M+ VRG DVAMIFQEPMTALNPLFTIGNQIAE LM HEG+SAR AA Sbjct: 63 LFEGQDILQRSEAAMRAVRGKDVAMIFQEPMTALNPLFTIGNQIAEGLMLHEGLSARIAA 122 Query: 125 KRAVALLEKTGIAEPARRALAYPHELSGGQRQRAMIAMALACKPKLLIADEPTTALDVTI 184 RA+ LL+KTGI EP RRAL+YPH+LSGGQRQRAMIAMALACKPKLLIADEPTTALDVTI Sbjct: 123 LRAIELLDKTGIPEPQRRALSYPHQLSGGQRQRAMIAMALACKPKLLIADEPTTALDVTI 182 Query: 185 QVQILALLNQLQREENMAVLIISHDLNLVRHFADRVGVMEQGRLVESASVTELFAHPQQP 244 QVQI+ LLNQLQREENMAVL+I+HDLNLVRHFADRVGVME+G LVE A+ ELF P++ Sbjct: 183 QVQIVELLNQLQREENMAVLMITHDLNLVRHFADRVGVMEKGCLVEVAATRELFTAPRET 242 Query: 245 YTRKLLQSHPQRNAAELAADAPVLLQAEQLRCTYQIKQGWFAKRAFHAVDGIDLQLRRGQ 304 YTRKLL S PQ+ L A LL AE +RCT+ IKQGWF F AVD + +Q+R G+ Sbjct: 243 YTRKLLASQPQQLVNTLNESAVPLLSAEHVRCTFDIKQGWFKTTPFVAVDDVSVQVRPGE 302 Query: 305 TLGIVGESGSGKSTLGMALLRLSGASVEGRIRFDGQPISERSSRALRPLRARMQVVFQDP 364 TLGIVGESGSGK+TLG+ALLRLS A V G I FDG+P++ S ALRPLRARMQ+VFQDP Sbjct: 303 TLGIVGESGSGKTTLGLALLRLSSARVSGTIAFDGKPLNAMQSDALRPLRARMQIVFQDP 362 Query: 365 FASLSPRRTVEQIVGEGLALHHPELSAEQQRQAIIAALQEVGLTAAVLERYPHEFSGGQR 424 FASLSPRRT+EQIVGEGLALH P+L A R+A+ AL EVGL ++ RYPHEFSGGQR Sbjct: 363 FASLSPRRTIEQIVGEGLALHQPQLGAAGIRKAVADALLEVGLPPDIMARYPHEFSGGQR 422 Query: 425 QRIAIARALVLQPELLLLDEPTSALDVTVQQQVLQLLAELQRRHGLAYLFITHDLAVVQA 484 QRIAIAR LVL+P+L+LLDEPTS+LDV+VQQQVLQLL ELQ+++ LAY+FI+HDLAV++A Sbjct: 423 QRIAIARVLVLKPDLVLLDEPTSSLDVSVQQQVLQLLLELQKKYELAYIFISHDLAVIRA 482 Query: 485 MAHEVIVMKDGKVVESGPVTQVLQQPQQEYTRRLVAAATYAQA 527 MAH V+VMKDGKVVESG VL QP + YT+RL+AA+ YA A Sbjct: 483 MAHRVMVMKDGKVVESGMTQAVLSQPTEAYTQRLLAASVYAAA 525 >gi|134096444|ref|YP_001101519.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 321 Score = 223 bits (567), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 119/250 (47%), Positives = 159/250 (63%), Gaps = 4/250 (1%) Query: 11 LTVRFGDTVVVDRVSFAIAPGEKFALVGESGSGKTVSSLAVLQLNQDARYE---GSILLD 67 T R G V+ VSF++APG+ LVGESGSGK++++ +++ L DA + G ILL Sbjct: 8 FTAREGVVKAVEDVSFSVAPGQIMGLVGESGSGKSMTAYSIMGL-IDAPGKIVAGKILLK 66 Query: 68 GQDVLKKSERQMQQVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMHHEGISAREAAKRA 127 QD+ S M+++RGN +AMIFQ+PM LNP+ I Q+ E ++ H+ + A A Sbjct: 67 DQDLRALSPEAMRRIRGNRIAMIFQDPMMTLNPVLRIDTQMMEAVLAHQDVGKATARAMA 126 Query: 128 VALLEKTGIAEPARRALAYPHELSGGQRQRAMIAMALACKPKLLIADEPTTALDVTIQVQ 187 L + GIA P R LAYPH+ SGG RQR IA+AL KP L+I DEPTTALDVTIQ Q Sbjct: 127 RDALVRVGIASPDERLLAYPHQFSGGMRQRVAIAIALLNKPDLIICDEPTTALDVTIQGQ 186 Query: 188 ILALLNQLQREENMAVLIISHDLNLVRHFADRVGVMEQGRLVESASVTELFAHPQQPYTR 247 IL + +L RE A++ I+HDL+++ AD V VM G++VES SV E+ PQ PYT Sbjct: 187 ILYEMQKLCRESGTALIWITHDLSVIAGLADAVCVMYAGKIVESGSVQEVLEQPQHPYTH 246 Query: 248 KLLQSHPQRN 257 L+ S P RN Sbjct: 247 GLIASSPSRN 256 Score = 174 bits (440), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 102/238 (42%), Positives = 148/238 (62%), Gaps = 9/238 (3%) Query: 292 AVDGIDLQLRRGQTLGIVGESGSGKSTLG---MALLRLSGASVEGRIRFDGQPISERSSR 348 AV+ + + GQ +G+VGESGSGKS M L+ G V G+I Q + S Sbjct: 17 AVEDVSFSVAPGQIMGLVGESGSGKSMTAYSIMGLIDAPGKIVAGKILLKDQDLRALSPE 76 Query: 349 ALRPLRA-RMQVVFQDPFASLSPRRTVEQIVGEGLALHHPELSAEQQRQAIIAALQEVGL 407 A+R +R R+ ++FQDP +L+P ++ + E + L H ++ R AL VG+ Sbjct: 77 AMRRIRGNRIAMIFQDPMMTLNPVLRIDTQMMEAV-LAHQDVGKATARAMARDALVRVGI 135 Query: 408 TAAVLER---YPHEFSGGQRQRIAIARALVLQPELLLLDEPTSALDVTVQQQVLQLLAEL 464 A+ ER YPH+FSGG RQR+AIA AL+ +P+L++ DEPT+ALDVT+Q Q+L + +L Sbjct: 136 -ASPDERLLAYPHQFSGGMRQRVAIAIALLNKPDLIICDEPTTALDVTIQGQILYEMQKL 194 Query: 465 QRRHGLAYLFITHDLAVVQAMAHEVIVMKDGKVVESGPVTQVLQQPQQEYTRRLVAAA 522 R G A ++ITHDL+V+ +A V VM GK+VESG V +VL+QPQ YT L+A++ Sbjct: 195 CRESGTALIWITHDLSVIAGLADAVCVMYAGKIVESGSVQEVLEQPQHPYTHGLIASS 252 >gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 336 Score = 190 bits (483), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 106/255 (41%), Positives = 159/255 (62%), Gaps = 5/255 (1%) Query: 271 AEQLRCTYQIKQGWFAKRA---FHAVDGIDLQLRRGQTLGIVGESGSGKSTLGMALLRLS 327 A+ L +I + AK++ HAVD + L + G+ +G+VGESG GKSTLG + L Sbjct: 19 AQPLDTAARIANLFGAKKSAEVVHAVDQVTLTIHAGEVVGLVGESGCGKSTLGRMAVGLH 78 Query: 328 GASVEGRIRFDGQPISERSSRALRPLRARMQVVFQDPFASLSPRRTVEQIVGEGLALHHP 387 S R+ + G + S+ R + MQ++FQDP+ASL+PR ++ ++GE + H Sbjct: 79 TLSSGSRL-WKGVNLEVSSAAERRQQQLGMQMIFQDPYASLNPRMRIQDVIGEA-PVAHG 136 Query: 388 ELSAEQQRQAIIAALQEVGLTAAVLERYPHEFSGGQRQRIAIARALVLQPELLLLDEPTS 447 + A +Q + + LQ VGL A+ R+PH+FSGGQR RI IARAL ++PELL+ DE + Sbjct: 137 MVPASEQTEYVARLLQTVGLDPALARRFPHQFSGGQRARIGIARALAVKPELLVCDEAVA 196 Query: 448 ALDVTVQQQVLQLLAELQRRHGLAYLFITHDLAVVQAMAHEVIVMKDGKVVESGPVTQVL 507 ALDV++Q QVL L +L+ L YLFI+HDL VV+ ++ V++M G++VES P ++ Sbjct: 197 ALDVSIQAQVLNLFIKLRDELNLTYLFISHDLGVVRHVSDRVLIMYLGRIVESSPTAELF 256 Query: 508 QQPQQEYTRRLVAAA 522 +P YT L+A+A Sbjct: 257 ARPNHPYTVALLASA 271 Score = 172 bits (435), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 107/239 (44%), Positives = 141/239 (58%), Gaps = 13/239 (5%) Query: 21 VDRVSFAIAPGEKFALVGESGSGKTVSSLAVLQLNQDARYEGSILLDGQD--VLKKSERQ 78 VD+V+ I GE LVGESG GK S+L + + GS L G + V +ER+ Sbjct: 44 VDQVTLTIHAGEVVGLVGESGCGK--STLGRMAVGLHTLSSGSRLWKGVNLEVSSAAERR 101 Query: 79 MQQVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMHHEGISAREAAKRAVALLEKTGIAE 138 QQ+ + MIFQ+P +LNP I + I E + H + A E + LL+ G+ + Sbjct: 102 QQQL---GMQMIFQDPYASLNPRMRIQDVIGEAPVAHGMVPASEQTEYVARLLQTVGL-D 157 Query: 139 PA--RRALAYPHELSGGQRQRAMIAMALACKPKLLIADEPTTALDVTIQVQILALLNQLQ 196 PA RR +PH+ SGGQR R IA ALA KP+LL+ DE ALDV+IQ Q+L L +L+ Sbjct: 158 PALARR---FPHQFSGGQRARIGIARALAVKPELLVCDEAVAALDVSIQAQVLNLFIKLR 214 Query: 197 REENMAVLIISHDLNLVRHFADRVGVMEQGRLVESASVTELFAHPQQPYTRKLLQSHPQ 255 E N+ L ISHDL +VRH +DRV +M GR+VES+ ELFA P PYT LL S P+ Sbjct: 215 DELNLTYLFISHDLGVVRHVSDRVLIMYLGRIVESSPTAELFARPNHPYTVALLASAPR 273 >gi|134095759|ref|YP_001100834.1| ribosome-associated ATPase [Herminiimonas arsenicoxydans] Length = 931 Score = 139 bits (351), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 142/523 (27%), Positives = 235/523 (44%), Gaps = 42/523 (8%) Query: 1 MSVPLLEVKELTVRFGDTVVVDRVSFAIAPGEKFALVGESGSGKTVSSLAVLQLNQDARY 60 M++P++ + ++ +R+G TV + +S I L+G G GK SSL L Sbjct: 4 MALPVIRLADIGLRYGKTVALADISLDIPAQCMVGLIGPDGVGK--SSLLALAAGARKMQ 61 Query: 61 EGSILLDGQDVLKKSERQMQQVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMHHEGISA 120 +GS + G D+ +K R R +A + Q L P ++ + + G A Sbjct: 62 QGSADVLGGDMRRKRHRDAVCPR---IAYMPQGLGKNLYPTLSVEENL-QFFARLFGHDA 117 Query: 121 REAAKRAVALLEKTGIAEPARRALAYPHELSGGQRQRAMIAMALACKPKLLIADEPTTAL 180 E +R +L TG+ R + +LSGG +Q+ + AL P LLI DEPTT + Sbjct: 118 AERRRRIDSLTRSTGLFPFLTRPVG---KLSGGMKQKLGLCCALIHDPDLLILDEPTTGV 174 Query: 181 DVTIQVQILALLNQL-QREENMAVLIISHDLNLVRHFADRVGVMEQGRLVESASVTELFA 239 D + Q +L+ + Q+ ++V++ + ++ + F D + M+ GR++ + + EL A Sbjct: 175 DPLARAQFWSLIAGIRQQRPQISVIVATAYMDEAQGF-DWLVAMDGGRVLATGAPQELLA 233 Query: 240 HPQQ-----------PYTRKLLQSHPQRNAAELAADAPVLLQAEQLRCTYQIKQGWFAKR 288 P +K + L ADA V ++A L + Sbjct: 234 QTGSADLEAAFIALLPEEKKRGHQAVEIQPLALGADAEVAIEARDLTMRFG--------- 284 Query: 289 AFHAVDGIDLQLRRGQTLGIVGESGSGKSTLGMALLRLSGASVEGRIRFDGQPISERSSR 348 F AVD ++ ++RRG+ G +G +G GK+T L L AS EGR G + Sbjct: 285 DFTAVDHVNFRIRRGEIFGFIGSNGCGKTTTMKVLTGLLAAS-EGRAWLFGHEVDPHDIA 343 Query: 349 ALRPLRARMQVVFQDPFASLSPRRTVEQIVGEGLALHHPELSAEQQRQAIIAALQEVGLT 408 R R+ + Q F+ S ++ +V + PE + Q + L GL Sbjct: 344 T----RRRVGYMSQS-FSLYSELSVMQNLVLHARLFNVPEAEVAARAQQM---LTRFGLE 395 Query: 409 AAVLERYPHEFSGGQRQRIAIARALVLQPELLLLDEPTSALDVTVQQQVLQLLAELQRRH 468 + + P++ G RQR+++A A+V PELL+LDEPTS +D + +LL EL RR Sbjct: 396 EEI-DALPNKLPLGMRQRLSLAVAMVHGPELLILDEPTSGVDPVARDNFWRLLIELSRRD 454 Query: 469 GLAYLFITHDLAVVQAMAHEVIVMKDGKVVESGPVTQVLQQPQ 511 + TH + + + +M GKV+ S Q++ Q Q Sbjct: 455 RVTIFISTHFMNEAER-CDRISLMHAGKVLVSDTPAQLVAQRQ 496 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 125 bits (314), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 87/248 (35%), Positives = 125/248 (50%), Gaps = 14/248 (5%) Query: 5 LLEVKELTVRFGDTVVVDRVSFAIAPGEKFALVGESGSGKTVSSLAVLQLNQDARYEGSI 64 LLE++ LT RFGD VVD +S +I GE F L+G SG GKT +L + D G I Sbjct: 3 LLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKT--TLLRMIAGFDEPDAGKI 60 Query: 65 LLDGQDVLKKSERQMQQVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMHHEGISAREAA 124 LLDG D+ Q V +FQ AL P T+ IA + E Sbjct: 61 LLDGVDLTGVPPEQRV------VRTVFQN--YALFPHMTVAGNIA-FPLEMANTPKSEIK 111 Query: 125 KRAVALLEKTGIAEPARRALAYPHELSGGQRQRAMIAMALACKPKLLIADEPTTALDVTI 184 ++ LE + A R YPHELSGGQRQR IA AL +PKLL+ DEP +ALD + Sbjct: 112 QKVDEALEDVRLTGFAAR---YPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQL 168 Query: 185 QVQILALLNQLQREENMAVLIISHDLNLVRHFADRVGVMEQGRLVESASVTELFAHPQQP 244 + Q+ L LQ+E + + ++HD + R+ VM +G + + T ++++P+ Sbjct: 169 REQMQIELINLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSR 228 Query: 245 YTRKLLQS 252 + + + Sbjct: 229 FVADFIGT 236 Score = 124 bits (310), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 126/239 (52%), Gaps = 17/239 (7%) Query: 293 VDGIDLQLRRGQTLGIVGESGSGKSTLGMALLRLSGASVE---GRIRFDGQPISERSSRA 349 VD I L + G+ ++G SG GK+TL LR+ E G+I DG ++ Sbjct: 19 VDNISLSIEAGEFFTLLGPSGCGKTTL----LRMIAGFDEPDAGKILLDGVDLT-----G 69 Query: 350 LRPLRARMQVVFQDPFASLSPRRTVEQIVGEGLALHHPELSAEQQRQAIIAALQEVGLTA 409 + P + ++ VFQ+ +L P TV + L + +Q + AL++V LT Sbjct: 70 VPPEQRVVRTVFQN--YALFPHMTVAGNIA--FPLEMANTPKSEIKQKVDEALEDVRLTG 125 Query: 410 AVLERYPHEFSGGQRQRIAIARALVLQPELLLLDEPTSALDVTVQQQVLQLLAELQRRHG 469 RYPHE SGGQRQR++IARALV +P+LLLLDEP SALD +++Q+ L LQ+ G Sbjct: 126 -FAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQKEVG 184 Query: 470 LAYLFITHDLAVVQAMAHEVIVMKDGKVVESGPVTQVLQQPQQEYTRRLVAAATYAQAT 528 + ++++THD A A++H + VM G + + T++ P+ + + T Sbjct: 185 ITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVADFIGTCNLFDGT 243 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.133 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 868,393 Number of extensions: 32702 Number of successful extensions: 452 Number of sequences better than 1.0e-08: 47 Number of HSP's gapped: 326 Number of HSP's successfully gapped: 90 Length of query: 529 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 443 Effective length of database: 716,977 Effective search space: 317620811 Effective search space used: 317620811 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)