BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3367.p
         (245 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095496|ref|YP_001100571.1| DNA polymerase III subunit epsi...   335   1e-93
gi|134093833|ref|YP_001098908.1| putative DNA polymerase/helicas...    67   6e-13

>gi|134095496|ref|YP_001100571.1| DNA polymerase III subunit epsilon
           [Herminiimonas arsenicoxydans]
          Length = 234

 Score =  335 bits (858), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 154/232 (66%), Positives = 196/232 (84%), Gaps = 2/232 (0%)

Query: 1   MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHLYINPERDSEEGALAVHGLT 60
           MRQI+LDTETTGL+PR+G+RI+EIGCVE+++R+L+G N H YINPERDSEEGALAVHGLT
Sbjct: 1   MRQIVLDTETTGLNPRSGDRIIEIGCVELIDRRLTGNNFHHYINPERDSEEGALAVHGLT 60

Query: 61  TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDIGFLDAELALLGLPPFKEHVSDVVDS 120
           TEFL+DKP F +I  EF DY+ GA+++IHNAPFD+GFLDAEL  + +P FK+HV  ++D+
Sbjct: 61  TEFLSDKPKFAEIVDEFRDYISGAEVVIHNAPFDVGFLDAELKRVEMPLFKDHVGGILDT 120

Query: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG 180
           LQ AKELHPG+RNSLDALCDRYG+SNAHR LHGALLDAELLAEVYL+MTRGQNSL+MDLG
Sbjct: 121 LQQAKELHPGKRNSLDALCDRYGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLSMDLG 180

Query: 181 AEEDVTEGEDGKLELAPLAEVIVVTASEEELGLHEEVLNQLDKEARGSCVWR 232
            ++  ++G    LE+  +A++++  A+ EEL  HE ++  LDKE +G C+WR
Sbjct: 181 GQDADSDGI--ALEVVAIADILLQPATAEELAEHELLMQSLDKEVKGQCLWR 230


>gi|134093833|ref|YP_001098908.1| putative DNA polymerase/helicase
           [Herminiimonas arsenicoxydans]
          Length = 193

 Score = 67.4 bits (163), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 85/172 (49%), Gaps = 9/172 (5%)

Query: 4   IILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHLYINPERDSEEGALAVHGLTTEF 63
           I +D ETTG +  N +RI EIG V V N          ++NP R        + G++   
Sbjct: 8   IFIDLETTGANLIN-DRITEIGIVTV-NADGDIDRWSSFVNPGRPIPSFIQDLTGISDRM 65

Query: 64  LADKPTFKQIAAEFLDYVRGAQIIIHNAPFDIGFLDAELALLGLPPFKEHVSDVVDSLQM 123
           +A  PTF+ +A    + +     I HNA FD GFL   LA  G         DV+ ++++
Sbjct: 66  VATAPTFETLADTVRERLEDGLFIAHNARFDYGFLHHALARAG----HALSIDVLCTVKL 121

Query: 124 AKELHP-GRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNS 174
           ++   P  +R++LD L  R+G+    R  H AL DA+LL +++  +T    S
Sbjct: 122 SRRFFPEEKRHNLDTLIARHGLVPEAR--HRALADADLLWQLWEKLTASMPS 171


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.136    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 464,239
Number of extensions: 18644
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 2
Length of query: 245
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 166
Effective length of database: 740,042
Effective search space: 122846972
Effective search space used: 122846972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)