BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3358.p (415 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 208 5e-55 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 206 1e-54 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 193 1e-50 gi|134096584|ref|YP_001101659.1| molybdate ABC transporter ATP-b... 146 2e-36 gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-bin... 135 3e-33 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 208 bits (529), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 109/247 (44%), Positives = 151/247 (61%), Gaps = 3/247 (1%) Query: 1 MADILCQGLSKHYAGGPPVLHPLDLKIDDGQFVVLLGPSGCGKSTMLRMIAGLEEISGGT 60 MA + + L++ + G V+ + L I+ G+F LLGPSGCGK+T+LRMIAG +E G Sbjct: 1 MALLEIRNLTRRF-GDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGK 59 Query: 61 LSIGGKVVNDLPARERNVAMVFQNYALYPHMNVYDNIAFGLRRLKRPAAEIDRRVREVAA 120 + + G + +P +R V VFQNYAL+PHM V NIAF L P +EI ++V E Sbjct: 60 ILLDGVDLTGVPPEQRVVRTVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKVDEALE 119 Query: 121 MLNLETLLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL 180 + L R P +SGGQ+QR +IARA++ P + L DEPLS LDA+LR Q++ ++ L Sbjct: 120 DVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINL 179 Query: 181 HQRLRTTTVYVTHDQLEAMTLADRVVLMQGGHIVQAGSPAELYRYPRTLFAAGFIGTPAM 240 + + T VYVTHDQ EA+ L+ R+ +M G+I Q P +Y YPR+ F A FIGT Sbjct: 180 QKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVADFIGT--C 237 Query: 241 NFLSGVV 247 N G V Sbjct: 238 NLFDGTV 244 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 206 bits (525), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 126/327 (38%), Positives = 188/327 (57%), Gaps = 23/327 (7%) Query: 4 ILCQGLSKHYAGGPPVLHPLDLKIDDGQFVVLLGPSGCGKSTMLRMIAGLEEISGGTLSI 63 I + ++K + G L+ + L+ G+ LLGPSGCGK+T+LR+IAGLE+ G + + Sbjct: 3 IEVKNINKKF-GNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLL 61 Query: 64 GGKVVNDLPARERNVAMVFQNYALYPHMNVYDNIAFGLRRLKRPAAE------IDRRVRE 117 G+ + RER V VFQ+YAL+ HM V++NIAFGLR RPAA I +V + Sbjct: 62 DGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLR--VRPAATRPSESVIKEKVTK 119 Query: 118 VAAMLNLETLLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDI 177 + ++ L+ L +R P +SGGQ+QR A+ARA+ P V L DEP LDAK+R +LR + Sbjct: 120 LLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWL 179 Query: 178 KRLHQRLRTTTVYVTHDQLEAMTLADRVVLMQGGHIVQAGSPAELYRYPRTLFAAGFIGT 237 +RLH L T+++VTHDQ EA+ +AD++VLM GH+ Q G+P ++Y P + F GF+G Sbjct: 180 RRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYGFLGN 239 Query: 238 PAMNFLSGVVERHGQQ---VAVRCTSQQSQRSQQSQCWV----LHDERFSRLPDGLAVKL 290 +N G V Q +A + + +V L +R++ +G+ V+L Sbjct: 240 --VNLFRGRVHEGVLQSSGIAFDAPDHAKTQDARGIGYVRPHDLEVDRYTSGAEGIVVQL 297 Query: 291 ----AVRPDYVRLAREQDDNRSLTSDV 313 A+ P +L E+DDN L V Sbjct: 298 RRAHAIGP-LAQLELERDDNGELIEAV 323 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 193 bits (491), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 121/331 (36%), Positives = 181/331 (54%), Gaps = 23/331 (6%) Query: 19 VLHPLDLKIDDGQFVVLLGPSGCGKSTMLRMIAGLEEISGGTLSIGGKVVNDL----PAR 74 ++H L + GQ LLG SGCGK+T+LR IAG E ++ G++++GGK +++ Sbjct: 33 IVHSLSFALQRGQIGCLLGQSGCGKTTVLRAIAGFEPLTEGSITLGGKEISNAHFTATPE 92 Query: 75 ERNVAMVFQNYALYPHMNVYDNIAFGLRRLKRPAAEIDRRVREVAAMLNLETLLERKPRA 134 R + +VFQ+YAL+PH++V DN+ FGLR+L P E R+ + ++ L + ++ P Sbjct: 93 TRQIGVVFQDYALFPHLSVADNVGFGLRKLAAP--ERQARIAALLTLVGLASQGKKFPHE 150 Query: 135 MSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRLHQRLRTTTVYVTHD 194 +SGGQQQR A+ARA+ P + L DEP SNLD LR +L +++ + + + TT V VTHD Sbjct: 151 LSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEVGTTAVLVTHD 210 Query: 195 QLEAMTLADRVVLMQGGHIVQAGSPAELYRYPRTLFAAGFIGTPAMNFLSGVVERHGQQV 254 Q EA +AD++ +MQ G IVQ S LY P F A FIG F G++++ Q V Sbjct: 211 QHEAFAIADQIGVMQDGVIVQWDSAYNLYHRPANRFVADFIGLGV--FTPGIIDQQTQNV 268 Query: 255 AVRCTSQQSQRSQQSQCWVLHDERFSRLPDGLAVKLAVRPDYVRLAREQDDNRSLTSDVS 314 + S ++ C PDG V + +R D V DD L ++V Sbjct: 269 NIELGSLPLCHGMET-CD-------PNAPDGQQVDVLLRADDVV----HDDTSPLQAEVV 316 Query: 315 VELVEILGADALLTCR-HGDETLTALLPAQR 344 + GAD L T + + L AL+P+ Sbjct: 317 RKAFR--GADFLYTLKLPSGQLLLALVPSHH 345 >gi|134096584|ref|YP_001101659.1| molybdate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 362 Score = 146 bits (369), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 78/206 (37%), Positives = 124/206 (60%), Gaps = 8/206 (3%) Query: 23 LDLKIDDGQFVVLLGPSGCGKSTMLRMIAGLEEISGGTLSIGGKVVND------LPARER 76 +DL + L G SG GK+T LR+IAGLE + L + G+V D LP +R Sbjct: 23 VDLALPGRGITALFGASGSGKTTCLRVIAGLERAADVYLEVNGEVWQDDAHNIFLPTHQR 82 Query: 77 NVAMVFQNYALYPHMNVYDNIAFGLRRLKRPAAEIDRRVREVAAMLNLETLLERKPRAMS 136 + VFQ +L+ H+NV N+ +G+RR+ + A + + ++L++ LL+RKP +S Sbjct: 83 PLGYVFQEASLFAHLNVQRNLEYGMRRIAKSARHVS--LDHAVSLLDIGHLLQRKPDKLS 140 Query: 137 GGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRLHQRLRTTTVYVTHDQL 196 GG++QR AIARA+ +P + L DEPL+ LDAK +A++ ++RLH L +YV+H Sbjct: 141 GGERQRVAIARALATSPRILLMDEPLAALDAKRKAEIMPYLERLHDELDIPVLYVSHSAD 200 Query: 197 EAMTLADRVVLMQGGHIVQAGSPAEL 222 E LAD +VL++ G ++ +G+ +L Sbjct: 201 EVARLADHLVLLETGRVIASGATQDL 226 >gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 271 Score = 135 bits (340), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 73/195 (37%), Positives = 117/195 (60%), Gaps = 6/195 (3%) Query: 20 LHPLDLKIDDGQFVVLLGPSGCGKSTMLRMIAGLEEISGGTLSIGGKVVNDLPARERNVA 79 L ++L + G+F+ L+G SGCGKST+L +IAGL + +GG L G + + P+ ER A Sbjct: 28 LTDINLTVAKGEFITLIGHSGCGKSTLLNLIAGLTQSTGGMLLCGNREIAG-PSPER--A 84 Query: 80 MVFQNYALYPHMNVYDNIAFGLRRL---KRPAAEIDRRVREVAAMLNLETLLERKPRAMS 136 +VFQN++L P + Y+N+ + R+ A++ R R +++ L +++P +S Sbjct: 85 VVFQNHSLLPWLTCYENVYLAVERVFGKVEGKAKLRARTRAALSLVGLTHAEQKRPNEIS 144 Query: 137 GGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRLHQRLRTTTVYVTHDQL 196 GG +QR IARA+ P V L DEP LDA RA L+ ++ ++ +T V VTHD Sbjct: 145 GGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDELLKIVAATGSTVVMVTHDVD 204 Query: 197 EAMTLADRVVLMQGG 211 EA+ L+D++V++ G Sbjct: 205 EAVLLSDKIVMLTNG 219 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 798,082 Number of extensions: 32437 Number of successful extensions: 243 Number of sequences better than 1.0e-08: 49 Number of HSP's gapped: 180 Number of HSP's successfully gapped: 51 Length of query: 415 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 331 Effective length of database: 723,567 Effective search space: 239500677 Effective search space used: 239500677 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)