BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3357.p
         (345 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095544|ref|YP_001100619.1| zinc-binding alcohol dehydrogen...    64   1e-11
gi|134095240|ref|YP_001100315.1| glutathione-independent formald...    61   1e-10

>gi|134095544|ref|YP_001100619.1| zinc-binding alcohol dehydrogenase
           [Herminiimonas arsenicoxydans]
          Length = 277

 Score = 63.5 bits (153), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 99/220 (45%), Gaps = 25/220 (11%)

Query: 1   MQALVLEATRQ-LSLREIDLPQQVGPQDVRIRIHTVGICGSDLHYYTHGSIGPFKVEAPM 59
           M+A+VL A  + L LR ++ P   G  D+ IR+HT G+C +DLH     +  P  V  P+
Sbjct: 1   MKAMVLSAAGEALQLRSVEKPV-AGANDLLIRVHTCGVCRTDLHLLD--AELPNAV-FPI 56

Query: 60  VLGHEASGTVIEVGSAVRHLKVGDRVCMEPGIPRL-----DSPATLRGMYNLDPSVRFWA 114
           + GHE  GT++  GSAV+  ++GDR     G+P L          + G  NL     F  
Sbjct: 57  IPGHEIVGTIVATGSAVQSFRIGDRA----GVPWLGHTCGQCSYCVAGQENLCDHASFTG 112

Query: 115 TPPIHGCLTDSVVHPAAFTYRLPDNVSFAEGAIVEPLSIGLQAATKARMKPGDTAV-VIG 173
              I+G   + V   + + + +P   S  E A +  L  GL      RM  G   + V G
Sbjct: 113 C-TINGGYAEYVAADSQYCFPMPGMYSNLEAAPL--LCAGLIGYRALRMAAGAKRIGVYG 169

Query: 174 AGTIGAMTALAALAGGAARVIL-----ADVVAQKLAHFAG 208
            G   A   +  +A    R +       D  AQ+LA+  G
Sbjct: 170 FGA--AAQIITQIACHQGRTVYGFTRPGDQAAQQLAYDCG 207


>gi|134095240|ref|YP_001100315.1| glutathione-independent
           formaldehyde dehydrogenase [Herminiimonas
           arsenicoxydans]
          Length = 414

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 106/256 (41%), Gaps = 32/256 (12%)

Query: 4   LVLEATRQLSLREIDLPQQVGPQDVR------IRIHTVGICGSDLHYYTHGSIGPFKVEA 57
           +  E   ++ +     P+ + PQ         ++I T  ICGSDLH Y     G F V  
Sbjct: 19  VTFEKPLEMKVNTFKFPELITPQGKSAPHGAILKIVTTNICGSDLHIYR----GSFAVPK 74

Query: 58  PMVLGHEASGTVIEVGSAVRHLKVGD--RVCMEPGIPRLDSPATLRG--MYNLDPSVRFW 113
            M +GHE +G VIEVGS V  +K GD   V    G  R  +   +R     N +P +   
Sbjct: 75  GMTMGHEMTGEVIEVGSDVEVVKKGDIVSVPFNVGCGRCYNCKHMRSDVCENTNPEIDCG 134

Query: 114 ATPPIHGCLT----DSVVHPAA-FT-YRLPDNVSFAEG-AIVEPLSIGLQAATKARMKP- 165
           A     G  T    D +  P A F   R PD  +  E    +  LS  L  A      P 
Sbjct: 135 AYGFNLGGWTGGQGDYLFVPYADFNLLRFPDKDAAMEKIRDLTLLSDVLPTAFHGFAGPD 194

Query: 166 ---------GDTAVVIGAGTIGAMTALAALAGGAARVILADVVAQKLAHFAGNPAVTTVD 216
                    G+  ++ GAG +G   A  A   GA  +I+AD + ++L     +  V T++
Sbjct: 195 WPAAPAYVVGENILIFGAGPVGRAGAACARLLGAGAIIVADYIQERLDLLKPH-GVETIN 253

Query: 217 VSQQSLVEVVQQRTEG 232
           +S    +E   +R  G
Sbjct: 254 LSDGVPIEEHLERITG 269


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 595,684
Number of extensions: 22891
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 3
Length of query: 345
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 263
Effective length of database: 730,157
Effective search space: 192031291
Effective search space used: 192031291
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)