BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3356.p
         (270 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096009|ref|YP_001101084.1| spermidine/putrescine ABC trans...    55   3e-09

>gi|134096009|ref|YP_001101084.1| spermidine/putrescine ABC
           transporter inner membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 258

 Score = 55.5 bits (132), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 102/212 (48%), Gaps = 6/212 (2%)

Query: 51  TLENYRQVIGSPEVLVGLTNSAVIVGSAVLLGTLMGVPAAYVIARYHVPGKRDIQFFLLS 110
           TL+ YR +    E+L    NS +I   +  + T++G  A + + RY +   R +Q  +L+
Sbjct: 46  TLDWYRVLFADEEMLRAAGNSLIIALVSSAVSTVLGTMAGFALHRYKI---RTLQILVLT 102

Query: 111 LRFLPPVAVAIPLIAIWVDLGLYDTRFSMIVTYLLTTLSTITWLSIPVFQRMPREIEEAA 170
              +P + V + L+  +V L +     S+++ ++  +L  +  +       M   + EAA
Sbjct: 103 PIAIPEILVGVSLLIFFVMLNITLGMLSVMLAHIAFSLGFVAIVVRSRLSGMDESLTEAA 162

Query: 171 TLDGYGPYAVFCKIALPNCAGTLLGGIIFSFVLVWNELMIALALTSSNSATLPVVASAFT 230
              G  P+  F ++ LP     ++ G + +F L  ++ +I      +N+ TLP+    ++
Sbjct: 163 RDCGATPWQAFRRVTLPLIMPGVVAGALMAFTLSIDDFVITFFTAGANTQTLPL--QIYS 220

Query: 231 SLGQEVPWGVINASTVLLALPPLIFVGVLSRL 262
            +   V   V   ST+L+AL  LI + + S+L
Sbjct: 221 MIKIAVTPEVNAVSTLLMAL-TLILIVIASKL 251


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.327    0.142    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 437,281
Number of extensions: 16571
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 2
Length of query: 270
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 190
Effective length of database: 736,747
Effective search space: 139981930
Effective search space used: 139981930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)