BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3353.p (462 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095799|ref|YP_001100874.1| putative two-component sensor k... 226 2e-60 gi|134095856|ref|YP_001100931.1| putative transmembrane sensor h... 198 4e-52 gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two... 166 2e-42 gi|134094769|ref|YP_001099844.1| sensor kinase CopS like [Hermin... 100 2e-22 gi|134096138|ref|YP_001101213.1| two component sensor histidine ... 90 2e-19 >gi|134095799|ref|YP_001100874.1| putative two-component sensor kinase transcriptional regulatory protein [Herminiimonas arsenicoxydans] Length = 512 Score = 226 bits (576), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 152/464 (32%), Positives = 237/464 (51%), Gaps = 14/464 (3%) Query: 4 SLRLRLLWWLLIPMAAYVGLSTSDAYDNAVASATLVQDRALLASARMMAGQVGWNDGAPV 63 SL +L W+L+P+ LS + Y A + A DRAL ++A QV +G V Sbjct: 32 SLFGEILDWMLVPLLLLWPLSIAITYLVAKSIANEPFDRALEDKVTVVAQQVKEVNGQVV 91 Query: 64 VSIPPAALELFASPAQDAVYYQVRMDDDTLLAGRPDFPAEPDFAALYPVYTTTTF---NG 120 + A+++ + D +YYQ+R DT + G P+ P D P T + + Sbjct: 92 TRLTGPAIDILHADDIDNIYYQIRDAHDTFVEGDPEMPLPKDAEESAPWSTKFRYDFIHN 151 Query: 121 KPLRVVSYIRALFDEGTL--------RMVAVSVGQTMQGRQEMIDDQWHASLRRQMVLLL 172 +R+ +YI + + RM V VG+T+ R ++++ + + ++L Sbjct: 152 TEVRI-AYIYVDLHKTQVEPQLSIEPRMALVQVGETLDKRSQLVNQIIKGVIVPEFIILP 210 Query: 173 LAMSLVVLGMTMELRPILALKDELTTREPDSLTPLRAGGLQQELRPIVEAINQYIQRLNA 232 +A+ LV +T LRP+ L+ + R PD L+P+ +G + +E+ P+V ++N ++RL+ Sbjct: 211 IALILVWFALTRGLRPLAELQQRIRARRPDDLSPIDSGHVPEEIIPLVGSLNDMLERLSQ 270 Query: 233 QVTVQKRFVADAAHQLRTPLAVIDSQIQFARQLEDPARVAQVLAALQEGSRSMTDLTNKL 292 + VQKRF+ADAAHQ++TPLA + Q + A + D A + + L L + S+S T + N+L Sbjct: 271 SIKVQKRFIADAAHQMKTPLAGMRMQSELALRQTDHAEIHKSLEQLAKSSKSATRMVNQL 330 Query: 293 LLLSQAEASNSSAFPRAPVDLVAVAALVLEELAGLALKKGIDLGLETTLESALVNGNEAQ 352 L L++AE P ++L +A ++ + + IDLG E E+ + G+ Sbjct: 331 LALARAENQTPQTKPMQVLELSELARDTVQNWVQTSFNRKIDLGFEQPDEAVMARGDATM 390 Query: 353 LGGLLMNLIDNALRYTPQGGKVTVGLENKRSQ--VIITVTDNGPGIPAEVRERVFERFYR 410 L LL NLIDNAL YTP GG TV + + + V DNGPGI R +FERFYR Sbjct: 391 LHELLNNLIDNALSYTPAGGNATVRVRTDQQAGLAFLEVEDNGPGIAPHERSHIFERFYR 450 Query: 411 NAAPDQPGSGLGLAIVREIVQASQGSIRLDAPAQGSGLVATVCL 454 + GSGLGLAIVREI I + + G CL Sbjct: 451 ILGSNVEGSGLGLAIVREIALQHNAEIEILNNPRCQGQKRPGCL 494 >gi|134095856|ref|YP_001100931.1| putative transmembrane sensor histidine kinase transcription regulator protein [Herminiimonas arsenicoxydans] Length = 448 Score = 198 bits (504), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 148/452 (32%), Positives = 225/452 (49%), Gaps = 19/452 (4%) Query: 13 LLIPMAAYVGLSTSDAYDNAVASATLVQDRALLASARMMAGQVGWNDGAPVVSIPPAALE 72 +L+P++ + + +Y A V D L AR M V N G + P A Sbjct: 1 MLVPLSLILLIDIVGSYFVVRHVANDVYDVELNEIAREMLLHVTHNKGEMGFDLAPEAER 60 Query: 73 LFASPAQDAVYYQVRMDDDTLLAGRPDFPAEPDF-AALYPVYTTTTFNGKPLRVVSYIRA 131 +D VYY +R D L+AG P P + + Y G+ +RV + +R Sbjct: 61 TLLLDKEDQVYYAIRTMDGNLIAGDPTLPVQTVIKSGKDTAYYDGVLQGQSVRV-ALLRG 119 Query: 132 ---LFDEGTLRMVAVSVGQTMQGRQEMIDDQWHASLRRQMVLLLLAMSLVVL-----GMT 183 L M+ V+ Q + R E +L Q++L + + L+ G+ Sbjct: 120 QPLLHPATEPVMIQVAETQVKRNRHER-------ALLIQLILPQVLLILIAGILIWRGVA 172 Query: 184 MELRPILALKDELTTREPDSLTPLRAGGLQQELRPIVEAINQYIQRLNAQVTVQKRFVAD 243 L P+ L+ E+ R L+P+ A + E+ P+V A+N + R++A + Q RF+AD Sbjct: 173 HGLAPLRKLQQEVGMRSHLDLSPIAADNVPGEVEPLVGAVNDLMTRVDAVLGFQGRFIAD 232 Query: 244 AAHQLRTPLAVIDSQIQFARQLEDPARVAQVLAALQEGSRSMTDLTNKLLLLSQAEASNS 303 AHQLRTP+A + + I+ A + D +V + L L + ++ L ++LL L++ E N+ Sbjct: 233 TAHQLRTPVAGLKAHIELALRENDLTQVKRALGHLYTSAERLSRLVSQLLSLARNE-PNN 291 Query: 304 SAFPRAPVDLVAVAALVLEELAGLALKKGIDLGLETTLESALVNGNEAQLGGLLMNLIDN 363 A AP DL +A +E LA KK IDLG +T + L+NG A++ ++ NL+DN Sbjct: 292 VAVNFAPFDLNQLALRAAQEWVPLAYKKQIDLGFDTAGQPVLLNGEAARVTEMINNLVDN 351 Query: 364 ALRYTPQGGKVTVGLENKRSQVIITVTDNGPGIPAEVRERVFERFYRNAAPDQPGSGLGL 423 A+RYTP GG+VTV + +I V+D+G IP E R R+FERF+R + GSGLGL Sbjct: 352 AIRYTPPGGRVTVHVRQDEHAHLI-VSDDGARIPVEERTRIFERFHRLLGSHEEGSGLGL 410 Query: 424 AIVREIVQASQGSIRLDAPAQGSGLVATVCLP 455 AIV EI +I L+ G G TV P Sbjct: 411 AIVHEIATLHNATITLEDDVDGVGNTFTVSFP 442 >gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two-component regulatory system with QseB, regulates flagella and motility by quorum sensing [Herminiimonas arsenicoxydans] Length = 430 Score = 166 bits (421), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 109/299 (36%), Positives = 159/299 (53%), Gaps = 15/299 (5%) Query: 168 MVLLLLAMSLVVLGMTMELRPILALKDELTTREPDSLTPLRAGGLQQELRPIVEAINQYI 227 M+ +L +V+G + L P+ L + R ++L PL EL+P++ A+N + Sbjct: 114 MIPVLALFIWIVVGRS--LYPLHHLARAIGRRSSNALEPLPGERYPPELQPMLAALNDLL 171 Query: 228 QRLNAQVTVQKRFVADAAHQLRTPLAVIDSQIQFARQLEDPARVAQVLAALQEGSRSMTD 287 RL+ + Q+ FVADAAH+LRTPL + Q+Q + D + A L E T Sbjct: 172 TRLDQTLVTQRAFVADAAHELRTPLTALKLQLQLVERENDDRQRATGFRKLHERLNRATH 231 Query: 288 LTNKLLLLSQAE---ASNSSAFPRAPVDLVAVAALVLEELAGLALKKGIDLGL----ETT 340 L +LL L++ E A SS +DL + A V+ + A A KG+DLG+ + Sbjct: 232 LVQQLLTLARHEYRIADRSS----QKIDLRQLTARVVSDYAPQAEHKGVDLGIAINDDQG 287 Query: 341 LESALVNGNEAQLGGLLMNLIDNALRYTPQGGK--VTVGLENKRSQVIITVTDNGPGIPA 398 ++A++ GN+ L LL NL+DNA+RYTP G+ VTV V++ V DNGPGIP Sbjct: 288 SDAAMITGNQDSLRILLGNLVDNAVRYTPSHGRVDVTVNTSTADHTVLLRVKDNGPGIPV 347 Query: 399 EVRERVFERFYRNAAPDQPGSGLGLAIVREIVQASQGSIRLDAPAQGSGLVATVCLPAL 457 + +ERVF+RFYR + GSGLGL I + I + +I L GL+ TV P L Sbjct: 348 QDQERVFDRFYRRDGTGESGSGLGLFIAKTIATQHEATIELSTADSKGGLIVTVRFPLL 406 >gi|134094769|ref|YP_001099844.1| sensor kinase CopS like [Herminiimonas arsenicoxydans] Length = 458 Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/279 (28%), Positives = 138/279 (49%), Gaps = 15/279 (5%) Query: 186 LRPILALKDELTTREPDSLTPLRAGGLQQELRPIVEAINQYIQRLNAQVTVQKRFVADAA 245 LR + A +T++ + P+ A + E+ + +N + RL + F AD A Sbjct: 187 LRTMAARAQTVTSQNMNERMPVDA--VPTEMTDLAVKLNAMLDRLQNDIARLTEFSADLA 244 Query: 246 HQLRTPLAVIDSQIQFA-RQLEDPARVAQVLAALQEGSRSMTDLTNKLLLLSQAEASNSS 304 H+LRTP++ + +Q Q A L++ E + + + + +L L+Q E N Sbjct: 245 HELRTPISNMLTQTHVVLNQSRSTADYRDSLSSNAEELQRLGNTISDMLFLAQTE--NGL 302 Query: 305 AFPR-APVDLVAVAALVLEELAGLALKKGIDLGLETTLESALVNGNEAQLGGLLMNLIDN 363 A P A +++ +LE LA +K + L E A+V G++ L NL+ N Sbjct: 303 ALPSVAKLNMARECQALLEFYEALAEEKKVVLRCEG---DAVVIGDQLMFRRALNNLLSN 359 Query: 364 ALRYTPQGGKVTVGLENKRSQVIITVTDNGPGIPAEVRERVFERFYR----NAAPDQPGS 419 A+RYTP G +++ + + S ITV ++G IPAE++ +F+RF+R + + Sbjct: 360 AIRYTPSYGTISIKITSAESGTTITVQNDGEEIPAEIQPHLFDRFFRADKSRKKSESDSA 419 Query: 420 GLGLAIVREIVQASQGSIRLDAPAQGSGLVATVCLPALP 458 GLGL+I R I+QA GS+ + ++ S ++ P+ P Sbjct: 420 GLGLSITRAIMQAHGGSVSV--VSRDSKTAFSLYFPSSP 456 >gi|134096138|ref|YP_001101213.1| two component sensor histidine kinase protein [Herminiimonas arsenicoxydans] Length = 405 Score = 89.7 bits (221), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 148/302 (49%), Gaps = 37/302 (12%) Query: 154 EMIDDQW----HASLRRQMVLLLLAMSLVVLGMTMELRPILALKDELTTREPDSLTPLRA 209 ++ DD+W H R+ + L+ L + + PI+ R S+ L A Sbjct: 105 KLPDDRWLVGQHPGRRKPPFSFFTTLLLIGLAIGIGSYPIVRRLTRRLERLQTSVEALGA 164 Query: 210 GGL--------QQELRPIVEAINQYIQRLNAQVTVQKRFVADAAHQLRTPLAVIDSQIQF 261 G L Q E+ + + N+ R+ A V QK +A+A+H+LR+PLA +I+ Sbjct: 165 GQLSTRIAVEGQDEVGRLASSFNRSAARIEALVDAQKALLANASHELRSPLA----RIRM 220 Query: 262 ARQLEDPARVAQVLAALQEGSRSMTDLTNKLLLLSQAEASNSSAFPRAPVDLVAVAALVL 321 A +L PA ++ + L+ + L +++LL S+ +A+ + +DL A L+ Sbjct: 221 AIELMGPAAQPEIRSELKRNIGELDQLIDEILLASRLDATADATQTFETIDLTA---LLA 277 Query: 322 EELAGLALKKGIDLGLETTLESALVNGNEAQLGGLLMNLIDNALRY---TPQGGKVTVGL 378 EE A +G + ++ ++G+ L L+ NL++NA RY TP +TV L Sbjct: 278 EECA--------RIGAQLDAQAIELSGDARLLRRLVRNLLENARRYGNDTP----ITVTL 325 Query: 379 ENK-RSQVIITVTDNGPGIPAEVRERVFERFYR--NAAPDQPGSGLGLAIVREIVQASQG 435 + V++ V D GPG+P RE +FE FYR A+ + G GLGL++VR+I + G Sbjct: 326 AAAPGNTVLLQVCDGGPGVPVAERENIFEPFYRVAGASEREGGVGLGLSLVRQIARRHGG 385 Query: 436 SI 437 + Sbjct: 386 DV 387 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.134 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 741,341 Number of extensions: 28108 Number of successful extensions: 191 Number of sequences better than 1.0e-08: 22 Number of HSP's gapped: 151 Number of HSP's successfully gapped: 22 Length of query: 462 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 377 Effective length of database: 720,272 Effective search space: 271542544 Effective search space used: 271542544 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)