BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3352.p (223 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095857|ref|YP_001100932.1| two-component regulatory system... 176 9e-46 gi|134095798|ref|YP_001100873.1| OmpR family response regulator ... 169 1e-43 gi|134094768|ref|YP_001099843.1| response regulator in two-compo... 141 3e-35 gi|134093799|ref|YP_001098874.1| response regulator in two-compo... 137 6e-34 gi|134096087|ref|YP_001101162.1| two-component system regulatory... 134 3e-33 >gi|134095857|ref|YP_001100932.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 176 bits (446), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 91/220 (41%), Positives = 142/220 (64%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFTVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 M++L++ED+ LA L + L + + VD A +GE A++ L ++ Y +VLLD+ LPK+ G Sbjct: 1 MRILIVEDDAVLAAALTRALTQAGYAVDYADNGEDANRALSNDAYALVLLDIALPKMDGL 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQS 120 VLRRLRER + VPV+ILTA ++D++V L GADDY+ KPF++ E AR++ L+RR Sbjct: 61 AVLRRLRERKSRVPVLILTARDTLDDRVAGLDLGADDYMTKPFDLLEFEARVRALIRRGQ 120 Query: 121 TDKAAEIHCGDLVYDSNTRQFAVAGVTLALPAREHDVLEVLMLKQGKTVSKTALMKGVFS 180 D + G L +D + V + L RE V EVL+ +QG+ V+K ++ +F Sbjct: 121 FDAGKSLTHGGLRFDLEAHRLFHNDVPVELSVRELAVFEVLLSRQGQVVTKEQMVDRLFG 180 Query: 181 LSEEPSADAIEIYISRLRKKLEHSSAAIMTLRGLGYLLKQ 220 ++ ++AIE+Y+ R+RKKLE + I T+RG+GYLL++ Sbjct: 181 WGDDGGSNAIEVYVHRMRKKLEPYNITIRTVRGMGYLLEK 220 >gi|134095798|ref|YP_001100873.1| OmpR family response regulator [Herminiimonas arsenicoxydans] Length = 233 Score = 169 bits (427), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 94/220 (42%), Positives = 138/220 (62%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFTVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 M++LL ED+ LA L + L++ + D +G AD L +++D+++LDL LPK+ G Sbjct: 1 MRILLAEDDSVLADGLTRSLRQSGYVTDCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQS 120 VL+RLR R++ +PV+ILTA SI+++V+ L GADD++ KPF + EL AR++ L RR + Sbjct: 61 EVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRGA 120 Query: 121 TDKAAEIHCGDLVYDSNTRQFAVAGVTLALPAREHDVLEVLMLKQGKTVSKTALMKGVFS 180 I G L YD R + L L ARE +LEVL+ + G+ VSK L+ + Sbjct: 121 GGGPTVIKHGPLSYDQVGRIAYINDQMLELSARELGLLEVLLQRSGRLVSKEQLVDHLCE 180 Query: 181 LSEEPSADAIEIYISRLRKKLEHSSAAIMTLRGLGYLLKQ 220 SEE S +AIE+Y+ RLRKK+E I T+RGLGY L++ Sbjct: 181 WSEEVSNNAIEVYVHRLRKKIEIGGLRIATVRGLGYCLEK 220 >gi|134094768|ref|YP_001099843.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 230 Score = 141 bits (355), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 129/226 (57%), Gaps = 3/226 (1%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFTVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLL++ED + +L+Q L E F VD A +G + NYD+++LD+MLP + G Sbjct: 1 MKLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGNYDLIILDVMLPDIDGW 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQS 120 +L+ LR N VP + LTA + ++V+ L GADDY+VKPF EL+AR++ L+RR Sbjct: 61 KILQALRNAGNNVPALFLTARDGVADRVKGLELGADDYVVKPFAFSELLARVRTLLRRGI 120 Query: 121 TDKAAE-IHCGDLVYDSNTRQFAVAGVTLALPAREHDVLEVLMLKQGKTVSKTALMKGVF 179 + + DLV D R AG L L +E +LE L+ +G+ + ++ + ++ Sbjct: 121 PSPLVDRMQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQIW 180 Query: 180 SLSEEPSADAIEIYISRLRKKL--EHSSAAIMTLRGLGYLLKQKDD 223 ++ + I++ I RLR K+ ++ I T+RG+GY+L+ DD Sbjct: 181 DINFNSDTNVIDVAIRRLRSKMDDDYEPKLISTIRGVGYVLEDPDD 226 >gi|134093799|ref|YP_001098874.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 207 Score = 137 bits (344), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 74/200 (37%), Positives = 121/200 (60%), Gaps = 3/200 (1%) Query: 22 EHKFTVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGKNVLRRLRERHNGVPVMILTAS 81 E F VD+A +G + +E YD+VLLD+MLP + G +++ LRE +PV+ LTA Sbjct: 2 EAGFMVDLARNGLDGHHMAMNEQYDLVLLDVMLPDVDGWRIVKSLREAGKQMPVLFLTAR 61 Query: 82 GSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQSTDKAAE-IHCGDLVYDSNTRQ 140 G +D++V+ L GADDYL+KPF EL+AR++ L+RR S +E + DL+ D R+ Sbjct: 62 GGVDDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGSAPSQSERLEVADLILDLPRRK 121 Query: 141 FAVAGVTLALPAREHDVLEVLMLKQGKTVSKTALMKGVFSLSEEPSADAIEIYISRLRKK 200 G + L +E +LE+L +QG+ + ++ + V+ ++ + ++AI++ I RLR K Sbjct: 122 ATRMGQKIVLTNKEFSLLELLARRQGEVLPRSLIASQVWDMNFDSDSNAIDVAIRRLRAK 181 Query: 201 LE--HSSAAIMTLRGLGYLL 218 ++ I T+RG+GY L Sbjct: 182 IDDPFEPKLIHTVRGMGYTL 201 >gi|134096087|ref|YP_001101162.1| two-component system regulatory protein [Herminiimonas arsenicoxydans] Length = 229 Score = 134 bits (338), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 126/228 (55%), Gaps = 6/228 (2%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFTVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 M++L+IEDN + L L+ + +D AA+G + YD V+LD+ LP + G Sbjct: 1 MRILIIEDNADIVANLYAFLEPRGYVLDCAANGYAGFALAAQHEYDAVILDIKLPGIDGL 60 Query: 61 NVLRRLR-ERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQ 119 + R++R E N PV++LTA ++D+KV +GADDYLVKPF + E+ R+K L+RR Sbjct: 61 TLCRKMRDELQNDTPVLMLTARDTLDDKVAGFDSGADDYLVKPFSLLEVEVRLKALIRRA 120 Query: 120 STDKAAE--IHCGDLVYDSNTRQFAVAGVTLALPAREHDVLEVLMLKQGKTVSKTALMKG 177 + GDL++D++T Q GV +AL +L LM + K VS+ L Sbjct: 121 RGKNQGTNFLSVGDLIFDTSTYQVKRDGVPIALTKTGFKILSCLMKEAPKVVSRETLELE 180 Query: 178 VFSLSEEPSADAIEIYISRLRKKLE--HSSAAIMTLRGLGYLLKQKDD 223 V+ P +DA+ +I LR+ L+ H A + T++G+GY L D+ Sbjct: 181 VWG-DHPPDSDALRTHIHALRQALDKSHPFAMLRTVQGIGYRLVGSDE 227 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.137 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 397,607 Number of extensions: 15623 Number of successful extensions: 118 Number of sequences better than 1.0e-08: 24 Number of HSP's gapped: 111 Number of HSP's successfully gapped: 24 Length of query: 223 Length of database: 1,000,347 Length adjustment: 78 Effective length of query: 145 Effective length of database: 743,337 Effective search space: 107783865 Effective search space used: 107783865 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)