BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3349.p (275 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding pro... 173 1e-44 gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting A... 164 6e-42 gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-bin... 163 9e-42 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 150 7e-38 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 138 3e-34 >gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 434 Score = 173 bits (438), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 88/233 (37%), Positives = 141/233 (60%), Gaps = 3/233 (1%) Query: 22 IELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKPTLG 81 IEL+ V+ F TADG L + + ++A GE VA++G +G GKST L ++ GL+ G Sbjct: 7 IELKGVAKSFKTADGTPCSVLENVNFALAEGEIVALLGKSGSGKSTLLRIMAGLIAADQG 66 Query: 82 EVRVMGQVVDGIDPRIGFVFQNDAVFPWRSVRDNVAAGPLFRGQPKAQAHALADEWIRRV 141 + GQ + I VFQ+ A+FPW +V+ NV G +G + AD + + Sbjct: 67 TAKYRGQEIYSPVSGIAMVFQSFALFPWLTVQQNVELGLEAQGMAPDEREKRADAMLDLI 126 Query: 142 GLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDELLRLWS 201 GL FG P +LSGGM++RV +A+ + P++LLMDE FSALD+ T ++D++L +W Sbjct: 127 GLAGFGGALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDILEMWE 186 Query: 202 AH---SGSVVFVTHDLEEAIALADKVYVLTARPATLKSVYPIDLPRPRVMEEV 251 + ++ V+H++EEA+ +AD++ VL++ P ++S I+LPRPR ++ V Sbjct: 187 EKRIPTKGILIVSHNIEEAVMMADRILVLSSSPGRIRSEIRINLPRPRNVDSV 239 >gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting ATPase [Herminiimonas arsenicoxydans] Length = 262 Score = 164 bits (414), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 88/216 (40%), Positives = 132/216 (61%), Gaps = 5/216 (2%) Query: 20 PAIELRNVSCRFITADGRATVALR-DFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKP 78 P +++R V+ ++ T + T R DF V + + ++GP+GCGKST L + G + P Sbjct: 7 PLLDVRGVTLQYKTKEHLVTATYRVDFK--VYKSDRFVLLGPSGCGKSTLLKAVGGYMMP 64 Query: 79 TLGEVRVMGQVVDGIDPRIGFVFQN-DAVFPWRSVRDNVAAGPLFRGQPKA-QAHALADE 136 T GE+R+ +V+ VFQ D + PW++V+ NV L G+ K +A A Sbjct: 65 TEGEMRLHDKVITKPWYDRMMVFQEFDQLPPWKTVKQNVMFPLLASGKLKGKEAEDKAMY 124 Query: 137 WIRRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDEL 196 +I +V L KF DHYPH LSGGM++RVA+A+ P+ILLMDEP++ALD TR MQDEL Sbjct: 125 YIEKVNLSKFADHYPHMLSGGMKQRVAIARGMAMEPDILLMDEPYAALDALTRKKMQDEL 184 Query: 197 LRLWSAHSGSVVFVTHDLEEAIALADKVYVLTARPA 232 L+LW +V+FVTH + EA+ + +++ +L+ P Sbjct: 185 LQLWDDTHFTVLFVTHSIAEAVKIGNRILLLSPHPG 220 >gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 271 Score = 163 bits (412), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 90/229 (39%), Positives = 139/229 (60%), Gaps = 5/229 (2%) Query: 22 IELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKPTLG 81 I++++ F T G AL D +++VA+GEF+ ++G +GCGKST L+LI GL + T G Sbjct: 9 IDIQHAEMSFHTKKGVFN-ALTDINLTVAKGEFITLIGHSGCGKSTLLNLIAGLTQSTGG 67 Query: 82 EVRVMGQVVDGIDPRIGFVFQNDAVFPWRSVRDNV--AAGPLF-RGQPKAQAHALADEWI 138 + + + G P VFQN ++ PW + +NV A +F + + KA+ A + Sbjct: 68 MLLCGNREIAGPSPERAVVFQNHSLLPWLTCYENVYLAVERVFGKVEGKAKLRARTRAAL 127 Query: 139 RRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDELLR 198 VGL P+++SGGM++RV +A+ P++LLMDEPF ALD TR +QDELL+ Sbjct: 128 SLVGLTHAEQKRPNEISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDELLK 187 Query: 199 LWSAHSGSVVFVTHDLEEAIALADKVYVLTARP-ATLKSVYPIDLPRPR 246 + +A +VV VTHD++EA+ L+DK+ +LT P AT+ + + L PR Sbjct: 188 IVAATGSTVVMVTHDVDEAVLLSDKIVMLTNGPSATIGEILEVKLAHPR 236 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 150 bits (379), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 83/210 (39%), Positives = 126/210 (60%), Gaps = 8/210 (3%) Query: 22 IELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKPTLG 81 +E+RN++ RF G TV + + S+S+ GEF ++GP+GCGK+T L +I G +P G Sbjct: 4 LEIRNLTRRF----GDNTV-VDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAG 58 Query: 82 EVRVMGQVVDGIDPR---IGFVFQNDAVFPWRSVRDNVAAGPLFRGQPKAQAHALADEWI 138 ++ + G + G+ P + VFQN A+FP +V N+A PK++ DE + Sbjct: 59 KILLDGVDLTGVPPEQRVVRTVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKVDEAL 118 Query: 139 RRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDELLR 198 V L F YPH+LSGG R+RV++A+ + P++LL+DEP SALD Q R MQ EL+ Sbjct: 119 EDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELIN 178 Query: 199 LWSAHSGSVVFVTHDLEEAIALADKVYVLT 228 L + V+VTHD EA+AL+ ++ V+ Sbjct: 179 LQKEVGITFVYVTHDQAEALALSHRIAVMN 208 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 138 bits (348), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 81/215 (37%), Positives = 124/215 (57%), Gaps = 12/215 (5%) Query: 21 AIELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKPTL 80 +IE++N++ +F VAL D S+ GE A++GP+GCGK+T L +I GL +P Sbjct: 2 SIEVKNINKKFGN-----FVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDH 56 Query: 81 GEVRVMGQVVDGIDPR---IGFVFQNDAVFPWRSVRDNVAAGPLFRGQPKAQAHALADEW 137 G+V + G+ R +GFVFQ+ A+F +V +N+A G R + ++ E Sbjct: 57 GQVLLDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEK 116 Query: 138 IRR----VGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQ 193 + + V LD D YP QLSGG R+R+ALA+ P +LL+DEPF ALD + R ++ Sbjct: 117 VTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELR 176 Query: 194 DELLRLWSAHSGSVVFVTHDLEEAIALADKVYVLT 228 L RL + +FVTHD EEA+ +AD++ ++ Sbjct: 177 RWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMN 211 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 531,074 Number of extensions: 21482 Number of successful extensions: 198 Number of sequences better than 1.0e-08: 47 Number of HSP's gapped: 140 Number of HSP's successfully gapped: 51 Length of query: 275 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 195 Effective length of database: 736,747 Effective search space: 143665665 Effective search space used: 143665665 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)