BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3347.p
         (228 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096546|ref|YP_001101621.1| hypothetical protein HEAR3399 [...   235   1e-63

>gi|134096546|ref|YP_001101621.1| hypothetical protein HEAR3399
           [Herminiimonas arsenicoxydans]
          Length = 225

 Score =  235 bits (599), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 116/225 (51%), Positives = 148/225 (65%), Gaps = 2/225 (0%)

Query: 2   LITIPQLLDPQALQAVRKLLNEAGEAWVDGRVTAGYQGAPVKFNQQIDERSELAQRCQHI 61
           ++ IP +L    +  +R+ L+ A   WVDG+ T G QGA VK N+Q+ E S +      I
Sbjct: 1   MLHIPSVLTSAQVIEIRQKLDAAD--WVDGKATVGAQGAQVKKNRQLPELSPVGMELGQI 58

Query: 62  IVSTLERHPRFISAALPNLIYPPMFNRYGQGMNFGAHVDGSVRIHPHNGRKLRTDVSATL 121
           I+  L  +P F SAALP    PP+FNRY  G ++G H+DGSVR  P +   LRTD+S TL
Sbjct: 59  ILKALVSNPLFFSAALPMRYMPPLFNRYEGGEHYGFHIDGSVRTIPGSNLSLRTDLSCTL 118

Query: 122 FLADPADYDGGELQIEDTYGMHSVKLAAGDMVLYPATSLHTVTPVTRGVRMGCFFWVQSL 181
           FL +P DYDGGEL + DTYG H VKL AGDM+LYP++SLH V PVTRG R+  FFW+QS+
Sbjct: 119 FLCEPEDYDGGELIVSDTYGEHEVKLPAGDMILYPSSSLHKVEPVTRGARVCSFFWLQSM 178

Query: 182 VRDDAQRQLLFEMDNAIQRLNQTEADALARRTLVGCYHNLLRQWS 226
           V DD +R LLFE+D  IQ+L +   D      L G YHNLLRQW+
Sbjct: 179 VADDGKRSLLFELDQNIQKLREKLGDCEEVVGLTGHYHNLLRQWA 223


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 446,933
Number of extensions: 17353
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 149
Effective length of database: 740,042
Effective search space: 110266258
Effective search space used: 110266258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)