BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3346.p (740 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096547|ref|YP_001101622.1| catecholate siderophore recepto... 290 1e-79 gi|134094592|ref|YP_001099667.1| putative ferrisiderophore recep... 153 2e-38 gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-de... 102 8e-23 gi|134096458|ref|YP_001101533.1| putative exogenous ferric sider... 65 1e-11 gi|134094196|ref|YP_001099271.1| putative vitamin B12 receptor [... 58 2e-09 >gi|134096547|ref|YP_001101622.1| catecholate siderophore receptor Fiu [Herminiimonas arsenicoxydans] Length = 759 Score = 290 bits (743), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 249/787 (31%), Positives = 370/787 (47%), Gaps = 99/787 (12%) Query: 3 RLTPIAAALVASFAAPLP---LYAQQVSSPSSAAAASPQLAPVTVEGRRDDFASTGTAIT 59 R + + A+ +F LP +YAQQV+S L V V G + + + + Sbjct: 13 RRSSCSTAVAMAFVV-LPGTTVYAQQVTS---------VLPEVEVHGTTESYKADTVSSP 62 Query: 60 KLPADLHDVPQSVTVVNKAQMQSQGVSSLADALRNVSGI---TLGGAEGGQIGNNINLNG 116 K L + Q++TV+ K +Q QG ++L +ALRN G+ +LG G+ I + G Sbjct: 63 KFTQPLLNTTQTITVIKKELVQQQGGATLTEALRNTPGVGTFSLGENGNTNTGDAIYMRG 122 Query: 117 FSARTDIYLDGFRDRGQYYRDTFAIDEVEVLMGPSSMLFGRGSTGGIINQVSKKANLKAA 176 F + I++DG RD G RD F I+++EV GP+ GRGS G IN +K+ +K A Sbjct: 123 FDTSSSIFVDGVRDLGSISRDIFNIEQIEVTKGPAGADTGRGSPTGSINLSTKQPTMKEA 182 Query: 177 TEVSGSVTTNGLVRTTADVNHPL--SDTSAVRVEAMAQNGPASTRNQSDVQDFGLAGSYV 234 S SV + R TAD+N PL +A R+ + + + R+ G+A ++ Sbjct: 183 YSGSVSVGSGDYKRITADLNKPLDFDGGAAFRINLLKDDSGVAGRDIVKNDRQGIAAAFA 242 Query: 235 WGIGTPTEITLSALLQHNQDQPDYGV--------------------PPLNGHPANVGRDT 274 +G+ T T L+ L + PD GV PP+ PA + Sbjct: 243 FGLKTNTRTYLNYLHVDQSNIPDGGVPTIGLPGYSSPVQAANPAATPPVVAIPARPFLNG 302 Query: 275 AYGLNSDR------TIQDVAS--LNAGIKHKIAPDVTLRSQTQF-----NYVHTDAVETA 321 A +NS DV + L A ++H I+PDV L++ T+F NY+ T + +A Sbjct: 303 ASRVNSSNFYGTVGDFDDVTADMLTARVEHDISPDVKLQNTTRFGKTSQNYLLTGFMGSA 362 Query: 322 PNTIGTITSNGFTPLSNASSSLPLSSLFVRAQSHDRSIHDYSIFNQTELAAKFTTGSIKH 381 PN +T N P + +L SS Q D++ +S NQT L AKF TG++KH Sbjct: 363 PN---LLTPN---PADPTTWTLARSS-----QMKDQTNEIFS--NQTNLTAKFDTGAVKH 409 Query: 382 DALVGVEVGHDGYDNQSYYRNGSCNGRSLNTAGSTSGYLDCVNLANP-VYSAAGASTADT 440 + GVE+ S RSL AG G + NL NP Y Sbjct: 410 SLVTGVEL-------------SSEKQRSLGYAG--LGTISAANLYNPNPYLVRTGYNPVG 454 Query: 441 VGNHAGGSANTIAAYVGDTIELVPQFKLVGGLRYDRYIASISNSINSTNNSSSTALAAAN 500 G ++ G NT++ Y+ DT+EL PQ+++ GG+R D Y +S + N A N Sbjct: 455 NGTNSEGRTNTLSVYLFDTLELSPQWQINGGVRVDHYDTKYESSTLNVRN------ATLN 508 Query: 501 QTVNFLSVRSGAIWEPSAAQSYYLSYGTSFNP------SLEQLTGTAGQQNLDPEKNRSY 554 ++ L+ + G +++P+ S Y+SY TS P +L +A N DP++ R+ Sbjct: 509 KSGTLLNWKLGGLYKPTEDSSLYVSYATSKQPPGGSNFALSSNANSAANVNYDPQETRTA 568 Query: 555 ELGGKWDVAEG-VALTAAAFQITKENARSQVGTGVYALAGTVRVNGARAGATGRITRHWQ 613 E+G KWD+ + + LT A ++ +N T + G RV G G G IT WQ Sbjct: 569 EIGAKWDLLDKRLGLTTAIYRTDVKNEIEGNATDGFTQTGKKRVEGVELGVVGEITSAWQ 628 Query: 614 VAANYTYLDAKVVGGAVADTSVGKVPINTPKHTFTLWSTYDLAPHWQVGGGANYMSQRYA 673 V+A YT + V GA+ + TPK FT W+TY L + +GGGA ++ + Sbjct: 629 VSAGYTRMRTDVTAGAIVNQDGTSGLSYTPKQAFTAWTTYKLPGGFTIGGGARFVDALHK 688 Query: 674 ---NATNTVQ-VGGYTRYDAMLAY-TTKAYDIRLNLYNLTNKMYYDALIQSDGGRSVPGS 728 A T Q V Y YDAM +Y +K ++LNLYNL +K Y A I G R PG Sbjct: 689 PKDGAVGTPQFVESYWVYDAMASYEVSKNVSLQLNLYNLADKDYV-ASINKSGYRYTPGI 747 Query: 729 GRTAMLS 735 R+A LS Sbjct: 748 ERSARLS 754 >gi|134094592|ref|YP_001099667.1| putative ferrisiderophore receptor [Herminiimonas arsenicoxydans] Length = 725 Score = 153 bits (387), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 199/756 (26%), Positives = 314/756 (41%), Gaps = 105/756 (13%) Query: 21 LYAQQVSSPSSAAAASPQLAPVTVEGRRDDFASTGTAI----------TKLPADLHDVPQ 70 L A S S+A A L V V G ++ +TG I TK L + Q Sbjct: 39 LQASPASQNESSAPAVTTLPAVNVSGVQE--TATGPVIGYRATRSSTATKTDTSLAETLQ 96 Query: 71 SVTVVNKAQMQSQGVSSLADALRNVSGITLGGAEGGQIGNNINLNGFSARTDIYLDGFRD 130 +VTVV + Q+ QG ++L DAL +G+ +++ + G A D+Y+DG R Sbjct: 97 AVTVVTRDQIVDQGATNLQDALTYAAGVRSDAYGLDSRTDSVLVRG--ASPDVYIDGLRQ 154 Query: 131 RGQYYR-----DTFAIDEVEVLMGPSSMLFGRGSTGGIINQVSKKANLKAATEVSGSVTT 185 YY D F ++ +EVL GP++M +G+GSTGG++N VSK+ + EV + Sbjct: 155 ANDYYTSAARPDPFTLERIEVLRGPAAMSYGQGSTGGVVNLVSKRPQAEFQGEVGVQLGN 214 Query: 186 NGLVRTTADVNHPLSDTSA--VRVEAMAQNGPASTRNQSDVQDFGLAGSYVWGIGTPTEI 243 G + ADV PL++ R+ A+A+N D + +A S W T + Sbjct: 215 FGRKQLQADVTGPLTEDKQWLYRLVAVARNADTQVDYVKDDRTL-IAPSLTWKPNGVTSL 273 Query: 244 TLSALLQHN------QDQPDYGV--PPLNGHPANVGRDTAYGLNSDRTIQDVASLNAGIK 295 TL L Q + Q P G+ P +NG + G DR D SL + Sbjct: 274 TLQGLYQRDRTGSTSQFLPWAGMLTPNVNGM---IPTSRFIGEPGDRYDTDRQSLGYLFE 330 Query: 296 HKIAPDVTLRSQTQFNYVHTDAVETAPNTIGTITSNGFTPLSNASSSLPLSSLFVRAQSH 355 H++ + T R ++ D ++ T S G L + P++ + + Sbjct: 331 HQLNDNWTFRQNFRYAVNEVDYFTHYADSFSTDPSTG---LPGGWAIDPVNQRLI-GRYA 386 Query: 356 DRSIHDYSIFN-QTELAAKFTTGSIKHDALVGVEVGHDGYDNQSYYRNGSCNGRSLNTAG 414 D SI I L AK TG ++HD L G++ D Q Sbjct: 387 DDSITKVKIATIDQHLQAKLQTGPLQHDLLAGLDYTRYQRDRQ----------------- 429 Query: 415 STSGY-LDCVNLANPVYSAAGASTADTVGNHAGGSANTIAAYVGDTIELVPQFKLVGGLR 473 SG+ +D +++ PVY G T+ + I Y+ D I++ + + GLR Sbjct: 430 --SGFGMDTIDVYAPVY---GNGVVATLADDPQSVQRQIGLYLQDQIKIGKNWIVSAGLR 484 Query: 474 YDRYIASISNSINSTNNSSSTALAAANQTVNFLSVRSGAIWEPSAAQSYYLSYGTSFNPS 533 +DR ++N++ + + S A + R G ++ S Y+SY SF P Sbjct: 485 HDR----VNNALAGSEDEESRA----------TTKRVGVMYLLENGWSPYVSYSESFTP- 529 Query: 534 LEQLTGT-AGQQNLDPEKNRSYELGGKWDVAEGVA-LTAAAFQITKENARSQVGTGVY-- 589 + GT A Q P + E G K+ G + TAA ++I ++N + + Sbjct: 530 ---VAGTNAYDQRFKPVRGEQIEGGVKYMPVNGHSQFTAAIWKIDEKNKSTTDPSNPLNQ 586 Query: 590 ALAGTVRVNGARAGATGRITRHWQVAANYTYLDAKVVGGAVADTSVGKVPINTPKHTFTL 649 G + G IT V A+Y Y D D + +V P+H Sbjct: 587 IQVGQTKNRGVELEWKASITPTIDVLAHYNYTD--------LDEQLDEV----PRHQAAA 634 Query: 650 WSTYDLA----PHWQVGGGANYMSQ-RYANATNTVQVGGYTRYDAMLAYTTKAYDIRLNL 704 W + + + +G GA YMS R A T V T DA+L++ T + LN+ Sbjct: 635 WGKWRFSIGGVSGFALGAGARYMSSFRDGVAPTTPSV---TLLDALLSWDTMNWRYALNV 691 Query: 705 YNLTNKMYYDALIQSDGGRSVPGSGRTAMLSLTYRM 740 NLT+K+Y + G G+ R+A+L+ TY+ Sbjct: 692 NNLTDKVYNATCLSR--GDCWYGARRSAVLTATYKF 725 >gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-dependent receptor protein [Herminiimonas arsenicoxydans] Length = 716 Score = 102 bits (253), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 163/714 (22%), Positives = 275/714 (38%), Gaps = 97/714 (13%) Query: 63 ADLHDVPQSVTVVNKAQMQSQGVSSLADALRNVSGITLGGAEGGQIGNNINLNGFSARTD 122 A L + P S++V+ QMQ + + S DA++ + + G + + ++ GF+ Sbjct: 60 APLRETPASISVITHEQMQDRSIRSATDAVKYDASVQNAYNAVG-LADWFSIRGFTL--- 115 Query: 123 IYLDGFRDRGQYYRDTFAI------------DEVEVLMGPSSMLFGRGSTGGIINQVSKK 170 D G YR + + EVL G + + G S+GGI+N V K+ Sbjct: 116 -------DMGSNYRKDGMVVLAHSMIPMENKERFEVLKGLAGLQVGMASSGGILNYVVKR 168 Query: 171 ANLKAATEVSGSVTTNGLVRTTADVNHPLSDTS-AVRVEAMAQNGPASTRNQSDVQDFGL 229 + V+ + G + D+ D R+ A + + + + + F + Sbjct: 169 PTNEPLRSVTLEASERGTLYGAVDLGGRSDDKRFGYRINAAGADIKSYVQGSNGERQF-V 227 Query: 230 AGSYVWGIGTPTEITLSALLQHNQDQPDYGVP------PLNGHPANVGRDTAYGLNSDRT 283 +G++ W + +P + L H++ Q VP P P V T S Sbjct: 228 SGAFDWRL-SPKALLQIDLDYHHKSQ--LSVPGFQLLGPAQRIPTGVSAKTMLNNQSWSL 284 Query: 284 IQDVASLNAGIKHKIAPDVTLRSQTQ---FNYVHTDAVETAPNTIGTITSNGFTPLSNAS 340 + N GIK + + + Q F DAV A + + G +P A Sbjct: 285 PVTDDTNNLGIKFEYELNEQWHTTLQANKFELRRDDAVALASGCV----AEGLSPGYCAD 340 Query: 341 SSLPLSSLFVRAQSHDRSIHDYSIFNQTELAAKFTTGSIKHDALVGVEV--GHDGYDNQS 398 + + L R + R++ + Q L KF G+IKHD +G+ D Y N Sbjct: 341 GTFNMYDL--RRDNDKRTV----MSTQAMLQGKFNAGTIKHDLTLGMSTMNRRDNYANFL 394 Query: 399 YYRNGSCNGRSLNTAGSTSGYLDCVNLANPVYSAAGASTADTVGNHAGGSANTIAAYVGD 458 + +AG+ S Y P Y+ + V ++ +V D Sbjct: 395 F-----------ESAGTGSIYY-------PKYNPLTLGPTNPVSLRRKDEERSV--FVQD 434 Query: 459 TIELVPQFKLVGGLRYDRYIASISNSINSTNNSSSTALAAANQTVNFLSVRSGAIWEPSA 518 + L +FKL G+RY + T +SS L +FL ++ P + Sbjct: 435 VLTLNDKFKLHAGMRY--------TQLQRTQFTSSGGLFRHTDK-DFLLPNVALVFSPQS 485 Query: 519 AQSYYLSYGTSFNPSLEQLTGTAGQQN-LDPEKNRSYELGGKWDVAEGVALTAAAFQITK 577 S Y +Y P E +G ++ LDP K+R E+G K D+++ +++ AA FQI + Sbjct: 486 NWSIYGTYSQGLEPGAEVPSGLVNEETVLDPNKSRQVEIGIKADLSQDISVAAALFQIHR 545 Query: 578 ENARSQVGTGV-YALAGTVRVNGARAGATGRITRHWQVAANYTYL--------DAKVVGG 628 +N + +G+ Y AG G A GR TR+ + A+ T L DA+V G Sbjct: 546 DNNYT---SGLNYVTAGKEVHRGLELSAQGRATRNLTLGASMTTLQAFAENTGDARVEGK 602 Query: 629 AVADTSVGKVPINTPKHTFTLWSTYDLAPHWQVGGGANYMSQRYANATNTVQVGGYTRYD 688 + + V K + +T L W + + N +V GY + Sbjct: 603 RIGNVPVLKSAVFM-DYTLPQMPALKLNAMWIYSSSKVFAPNAQISELNK-KVDGYHVLN 660 Query: 689 AMLAYTTKA----YDIRLNLYNLTNKMYYDALIQSDGGRSVPGSGRTAMLSLTY 738 Y TK R + N+ +K Y+ + GG +PG+ R LS + Sbjct: 661 VGAQYKTKVSGTKTTFRFGIDNVFDKFYWGDASNAYGGYLIPGAPRVFRLSAQF 714 >gi|134096458|ref|YP_001101533.1| putative exogenous ferric siderophore receptor; Iha adhesin precursor [Herminiimonas arsenicoxydans] Length = 737 Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 28/177 (15%) Query: 10 ALVASFAAPLPLYAQQV-SSPSSAAAASPQLAPVTVEGRRDDFASTGTAITKLPADLHDV 68 A +A PL + A S+ + AA QL + V + + ++ + Sbjct: 27 ARLARLTWPLAVLAATAGSAHAQDAAPEHQLKEIVV------------SASGFEQEIKNA 74 Query: 69 PQSVTVVNKAQMQSQGVSSLADALRNVSGITLGGAEGGQIGNNINLNGF-SARTDIYLDG 127 P S+TV+ + ++QS V+S+A+AL NV G+ + + G G +I + G SA T I +DG Sbjct: 75 PASITVITREELQSNRVNSIAEALSNVEGVDVTSSVGKTGGLSIQMRGLGSAYTLILIDG 134 Query: 128 FRDR--GQYYRDTF------------AIDEVEVLMGPSSMLFGRGSTGGIINQVSKK 170 R G + F AI+ +EV+ GP + L+G + GG+IN +++K Sbjct: 135 RRQNPAGNVVPNGFGDSASTFMPPPSAIERIEVIRGPMATLYGSDAIGGVINIITRK 191 >gi|134094196|ref|YP_001099271.1| putative vitamin B12 receptor [Herminiimonas arsenicoxydans] Length = 622 Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 74/285 (25%), Positives = 115/285 (40%), Gaps = 50/285 (17%) Query: 6 PIAAALVASFAAPLPLYAQQVSSPSSAAAASPQLAPVTVEGRRDDFASTGTAITKLPADL 65 P+A L S AA PL Q +S S L PV V R + K Sbjct: 15 PLAIVLSIS-AAFSPLSFAQTASDQS-------LEPVVVTASR--------TVQKAS--- 55 Query: 66 HDVPQSVTVVNKAQMQSQGVSSLADALRNVSGITLGGAEGGQIGNNINLNGFSARTDIYL 125 DV V+ ++Q G +SL D L+ G+ + G +++ L G +++ + L Sbjct: 56 -DVLADNIVITAEEIQQSGQTSLIDLLQKKRGVEITRNGGAGNSSSVFLRGSNSKQVVLL 114 Query: 126 -DGFRDRGQYYRD-TFA------IDEVEVLMGPSSMLFGRGSTGGIINQVSKKA------ 171 DG R D T++ ID VE++ GP S ++G + GG+I +KK Sbjct: 115 IDGVRSVSSTLGDATWSAIPLSQIDRVEIVFGPMSSMYGADAVGGVIQVFTKKGSGAPRI 174 Query: 172 NLKAAT----------EVSGSVTTNGLVRTTADVNHPLSDTSAVRVEAMAQNGPASTRNQ 221 + A T VSGSV +R + H +D + RV+A R + Sbjct: 175 SFSAGTGTYGEQVVSAGVSGSVEGEHRIRYALNTAHEQADGFSSRVDAGQNPDKDGYRKR 234 Query: 222 SDVQDFGLAGSYVWGIGTPTEITLSALLQHNQDQPDYGVPPLNGH 266 S ++G + W + E+ L+ L N + D G+ N H Sbjct: 235 S------MSGQFSWELAHGHELGLAFLNSRNNAEYDNGLSTYNAH 273 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.313 0.128 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,253,783 Number of extensions: 50001 Number of successful extensions: 174 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 153 Number of HSP's successfully gapped: 8 Length of query: 740 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 651 Effective length of database: 707,092 Effective search space: 460316892 Effective search space used: 460316892 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)