BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3345.p (220 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095798|ref|YP_001100873.1| OmpR family response regulator ... 198 2e-52 gi|134095857|ref|YP_001100932.1| two-component regulatory system... 192 9e-51 gi|134094768|ref|YP_001099843.1| response regulator in two-compo... 160 6e-41 gi|134093856|ref|YP_001098931.1| two-component system response r... 141 2e-35 gi|134093799|ref|YP_001098874.1| response regulator in two-compo... 139 1e-34 >gi|134095798|ref|YP_001100873.1| OmpR family response regulator [Herminiimonas arsenicoxydans] Length = 233 Score = 198 bits (503), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 108/222 (48%), Positives = 146/222 (65%), Gaps = 7/222 (3%) Query: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALS----QRFNAAVLVLDIGLPGID 56 M +LL EDD VL DGL+R L G+ V NG +A S Q F+ +L+LD+GLP + Sbjct: 1 MRILLAEDDSVLADGLTRSLRQSGYVTDCVKNGVEADSALSTQDFD--LLILDLGLPKMS 58 Query: 57 GFEVLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRR 116 G EVL+R+RA + PVL+LTA D+I RV GL+LGADD++ KPFA EL AR++AL RR Sbjct: 59 GLEVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRR 118 Query: 117 SA-PQPAQLSVGGLSLDNATKRAEIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAV 175 A P + G LS D + A I+ + +ELS RE +LE L+Q + R+VSK+Q++D + Sbjct: 119 GAGGGPTVIKHGPLSYDQVGRIAYINDQMLELSARELGLLEVLLQRSGRLVSKEQLVDHL 178 Query: 176 LPWGEDFTINAVEVYVSRIRLKIADSGVVIRTIRGFGYMLEK 217 W E+ + NA+EVYV R+R KI G+ I T+RG GY LEK Sbjct: 179 CEWSEEVSNNAIEVYVHRLRKKIEIGGLRIATVRGLGYCLEK 220 >gi|134095857|ref|YP_001100932.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 192 bits (489), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 104/221 (47%), Positives = 140/221 (63%), Gaps = 3/221 (1%) Query: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALSQRFN--AAVLVLDIGLPGIDGF 58 M +L+VEDD VL L+R L G+ V +NG DA N A+++LDI LP +DG Sbjct: 1 MRILIVEDDAVLAAALTRALTQAGYAVDYADNGEDANRALSNDAYALVLLDIALPKMDGL 60 Query: 59 EVLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSA 118 VLRR+R + PVL+LTARDT+ DRV GL+LGADDY+ KPF E AR++ALIRR Sbjct: 61 AVLRRLRERKSRVPVLILTARDTLDDRVAGLDLGADDYMTKPFDLLEFEARVRALIRRGQ 120 Query: 119 PQPAQ-LSVGGLSLDNATKRAEIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLP 177 + L+ GGL D R + +ELS+RE V E L+ +VV+K+Q++D + Sbjct: 121 FDAGKSLTHGGLRFDLEAHRLFHNDVPVELSVRELAVFEVLLSRQGQVVTKEQMVDRLFG 180 Query: 178 WGEDFTINAVEVYVSRIRLKIADSGVVIRTIRGFGYMLEKS 218 WG+D NA+EVYV R+R K+ + IRT+RG GY+LEKS Sbjct: 181 WGDDGGSNAIEVYVHRMRKKLEPYNITIRTVRGMGYLLEKS 221 >gi|134094768|ref|YP_001099843.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 230 Score = 160 bits (404), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 94/228 (41%), Positives = 141/228 (61%), Gaps = 10/228 (4%) Query: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDA--LSQRFNAAVLVLDIGLPGIDGF 58 M +L+VED+ + L + L GF V NNG D L+ N +++LD+ LP IDG+ Sbjct: 1 MKLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGNYDLIILDVMLPDIDGW 60 Query: 59 EVLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSA 118 ++L+ +R AGNN P L LTARD + DRV GLELGADDY+VKPFA EL+AR++ L+RR Sbjct: 61 KILQALRNAGNNVPALFLTARDGVADRVKGLELGADDYVVKPFAFSELLARVRTLLRRGI 120 Query: 119 PQPA--QLSVGGLSLDNATKRAEIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVL 176 P P ++ V L LD A + A G+++ L+ +E+ +LE+L++H V+ + I + Sbjct: 121 PSPLVDRMQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQI- 179 Query: 177 PWGEDFT--INAVEVYVSRIRLKIAD--SGVVIRTIRGFGYMLEKSEN 220 W +F N ++V + R+R K+ D +I TIRG GY+LE ++ Sbjct: 180 -WDINFNSDTNVIDVAIRRLRSKMDDDYEPKLISTIRGVGYVLEDPDD 226 >gi|134093856|ref|YP_001098931.1| two-component system response regulator [Herminiimonas arsenicoxydans] Length = 231 Score = 141 bits (356), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 131/223 (58%), Gaps = 7/223 (3%) Query: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALSQRFNAAV--LVLDIGLPGIDGF 58 M +L++ED+P + D L R L GFTV NG D L + AV +VLD+ LP + G+ Sbjct: 1 MRILVIEDEPKIGDYLVRGLAESGFTVCLARNGRDGLFMATHEAVDLIVLDMMLPLLSGW 60 Query: 59 EVLRRMRAAGN--NTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRR 116 E+L +R+ + + PV+ LTAR + DRV GLELGADDYL+KPFA EL+ARI+ L+RR Sbjct: 61 ELLTALRSQADKQHIPVICLTARGEVEDRVKGLELGADDYLIKPFAFVELLARIRTLLRR 120 Query: 117 SAPQPAQ-LSVGGLSLDNATKRAEIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAV 175 S + + +G + +D ++ +G++I L+ +E+ +L L + S V+S+ I V Sbjct: 121 SPVRDEDFIRIGDMEIDVMKRKVMRNGKRITLTAKEFGLLHLLARRQSEVLSRSVIASQV 180 Query: 176 LPWGEDFTINAVEVYVSRIRLKIAD--SGVVIRTIRGFGYMLE 216 + N ++ V R+R KI D +I T RG GY+ E Sbjct: 181 WDINFESDTNVIDAAVRRLRSKIDDPFETKLIHTQRGMGYVCE 223 >gi|134093799|ref|YP_001098874.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 207 Score = 139 bits (350), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 84/201 (41%), Positives = 125/201 (62%), Gaps = 10/201 (4%) Query: 24 GFTVHTVNNGND----ALSQRFNAAVLVLDIGLPGIDGFEVLRRMRAAGNNTPVLLLTAR 79 GF V NG D A++++++ +++LD+ LP +DG+ +++ +R AG PVL LTAR Sbjct: 4 GFMVDLARNGLDGHHMAMNEQYD--LVLLDVMLPDVDGWRIVKSLREAGKQMPVLFLTAR 61 Query: 80 DTIPDRVHGLELGADDYLVKPFATPELVARIKALIRR-SAP-QPAQLSVGGLSLDNATKR 137 + DRV GLELGADDYL+KPFA EL+AR++ L+RR SAP Q +L V L LD ++ Sbjct: 62 GGVDDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGSAPSQSERLEVADLILDLPRRK 121 Query: 138 AEIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWGEDFTINAVEVYVSRIRLK 197 A G+KI L+ +E+++LE L + V+ + I V D NA++V + R+R K Sbjct: 122 ATRMGQKIVLTNKEFSLLELLARRQGEVLPRSLIASQVWDMNFDSDSNAIDVAIRRLRAK 181 Query: 198 IAD--SGVVIRTIRGFGYMLE 216 I D +I T+RG GY L+ Sbjct: 182 IDDPFEPKLIHTVRGMGYTLD 202 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.138 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 420,152 Number of extensions: 17166 Number of successful extensions: 145 Number of sequences better than 1.0e-08: 24 Number of HSP's gapped: 116 Number of HSP's successfully gapped: 24 Length of query: 220 Length of database: 1,000,347 Length adjustment: 78 Effective length of query: 142 Effective length of database: 743,337 Effective search space: 105553854 Effective search space used: 105553854 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)