BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3344.p (472 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095799|ref|YP_001100874.1| putative two-component sensor k... 233 2e-62 gi|134095856|ref|YP_001100931.1| putative transmembrane sensor h... 227 1e-60 gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two... 174 6e-45 gi|134094769|ref|YP_001099844.1| sensor kinase CopS like [Hermin... 120 1e-28 gi|134093857|ref|YP_001098932.1| putative two-component system s... 115 4e-27 >gi|134095799|ref|YP_001100874.1| putative two-component sensor kinase transcriptional regulatory protein [Herminiimonas arsenicoxydans] Length = 512 Score = 233 bits (593), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 164/476 (34%), Positives = 256/476 (53%), Gaps = 25/476 (5%) Query: 7 AAPTAAAAASISSARASIRRDLLKWLIAPLLLLNLVGAGLTYWLAWLPAQHAFDQNLMDS 66 A+ T A + S+ ++L W++ PLLLL + +TY +A A FD+ L D Sbjct: 16 ASNTGTTAQHEERTQRSLFGEILDWMLVPLLLLWPLSIAITYLVAKSIANEPFDRALEDK 75 Query: 67 TWGLYAQVRHRQERTSAELTQQAEQILRSNHSDTTFFAVRNTQGEILVGDKGFPQLP--- 123 + QV+ + LT A IL ++ D ++ +R+ + GD P LP Sbjct: 76 VTVVAQQVKEVNGQVVTRLTGPAIDILHADDIDNIYYQIRDAHDTFVEGDPEMP-LPKDA 134 Query: 124 -ESETYDRPFNYDGEMRGEPVRISAI-----------QVRVKNGVISVAVAETIRKRDRA 171 ES + F YD E VRI+ I Q+ ++ + V V ET+ KR + Sbjct: 135 EESAPWSTKFRYDFIHNTE-VRIAYIYVDLHKTQVEPQLSIEPRMALVQVGETLDKRSQL 193 Query: 172 HYTILLSFLLLDGALTFGSLSVVMIAVRRGLRPLKSLQRNLEQRDHGKLGAIDGIGAPVE 231 I+ ++ + + +L +V A+ RGLRPL LQ+ + R L ID P E Sbjct: 194 VNQIIKGVIVPEFIILPIALILVWFALTRGLRPLAELQQRIRARRPDDLSPIDSGHVPEE 253 Query: 232 LQPLIVAMNELMARINKGEQAQQNFMADVAHQLRTPLTGLKLQLELLHDKHHDQPDTARS 291 + PL+ ++N+++ R+++ + Q+ F+AD AHQ++TPL G+++Q EL + D + +S Sbjct: 254 IIPLVGSLNDMLERLSQSIKVQKRFIADAAHQMKTPLAGMRMQSELAL-RQTDHAEIHKS 312 Query: 292 LAMMNSSVERMIRQSRQLLALARSEPGLFESRKLEELSLDKLVEESVQHFIEEADKKQID 351 L + S + R QLLALAR+E +++ ++ L L +L ++VQ++++ + ++ID Sbjct: 313 LEQLAKSSKSATRMVNQLLALARAENQTPQTKPMQVLELSELARDTVQNWVQTSFNRKID 372 Query: 352 LGFDLQP---ARLRGDRFLLSDLIDNLIDNAVRYSPQQG--TVTVRCLEQDGATVLSVED 406 LGF+ QP RGD +L +L++NLIDNA+ Y+P G TV VR +Q G L VED Sbjct: 373 LGFE-QPDEAVMARGDATMLHELLNNLIDNALSYTPAGGNATVRVRTDQQAGLAFLEVED 431 Query: 407 SGPGIAPEHRELIFDRYYRA-NDKIAGSGLGLAIVREIAHDHGGVISVDCKEQGQG 461 +GPGIAP R IF+R+YR + GSGLGLAIVREIA H I + + QG Sbjct: 432 NGPGIAPHERSHIFERFYRILGSNVEGSGLGLAIVREIALQHNAEIEILNNPRCQG 487 >gi|134095856|ref|YP_001100931.1| putative transmembrane sensor histidine kinase transcription regulator protein [Herminiimonas arsenicoxydans] Length = 448 Score = 227 bits (578), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 152/447 (34%), Positives = 235/447 (52%), Gaps = 10/447 (2%) Query: 32 LIAPLLLLNLVGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQERTSAELTQQAEQ 91 ++ PL L+ L+ +Y++ A +D L + + V H + +L +AE+ Sbjct: 1 MLVPLSLILLIDIVGSYFVVRHVANDVYDVELNEIAREMLLHVTHNKGEMGFDLAPEAER 60 Query: 92 ILRSNHSDTTFFAVRNTQGEILVGDKGFPQLPESETYDRPFNYDGEMRGEPVRISAIQ-- 149 L + D ++A+R G ++ GD P ++ YDG ++G+ VR++ ++ Sbjct: 61 TLLLDKEDQVYYAIRTMDGNLIAGDPTLPVQTVIKSGKDTAYYDGVLQGQSVRVALLRGQ 120 Query: 150 --VRVKNGVISVAVAETIRKRDRAHYTILLSFLLLDGALTFGSLSVVMIAVRRGLRPLKS 207 + + + VAET KR+R +L+ +L L + ++ V GL PL+ Sbjct: 121 PLLHPATEPVMIQVAETQVKRNRHERALLIQLILPQVLLILIAGILIWRGVAHGLAPLRK 180 Query: 208 LQRNLEQRDHGKLGAIDGIGAPVELQPLIVAMNELMARINKGEQAQQNFMADVAHQLRTP 267 LQ+ + R H L I P E++PL+ A+N+LM R++ Q F+AD AHQLRTP Sbjct: 181 LQQEVGMRSHLDLSPIAADNVPGEVEPLVGAVNDLMTRVDAVLGFQGRFIADTAHQLRTP 240 Query: 268 LTGLKLQLELLHDKHHDQPDTARSLAMMNSSVERMIRQSRQLLALARSEPGLFESRKLEE 327 + GLK +EL + +D R+L + +S ER+ R QLL+LAR+EP + Sbjct: 241 VAGLKAHIELAL-RENDLTQVKRALGHLYTSAERLSRLVSQLLSLARNEPNNV-AVNFAP 298 Query: 328 LSLDKLVEESVQHFIEEADKKQIDLGFDL--QPARLRGDRFLLSDLIDNLIDNAVRYSPQ 385 L++L + Q ++ A KKQIDLGFD QP L G+ ++++I+NL+DNA+RY+P Sbjct: 299 FDLNQLALRAAQEWVPLAYKKQIDLGFDTAGQPVLLNGEAARVTEMINNLVDNAIRYTPP 358 Query: 386 QGTVTVRCLEQDGATVLSVEDSGPGIAPEHRELIFDRYYR-ANDKIAGSGLGLAIVREIA 444 G VTV QD L V D G I E R IF+R++R GSGLGLAIV EIA Sbjct: 359 GGRVTVHV-RQDEHAHLIVSDDGARIPVEERTRIFERFHRLLGSHEEGSGLGLAIVHEIA 417 Query: 445 HDHGGVISVDCKEQGQGTIFTVRFPLA 471 H I+++ G G FTV FP++ Sbjct: 418 TLHNATITLEDDVDGVGNTFTVSFPVS 444 >gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two-component regulatory system with QseB, regulates flagella and motility by quorum sensing [Herminiimonas arsenicoxydans] Length = 430 Score = 174 bits (442), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 117/329 (35%), Positives = 178/329 (54%), Gaps = 17/329 (5%) Query: 153 KNGVISVAVAETIRKRDRAHYTI--LLSFLLLDGALTFGSLSVVMIAVRRGLRPLKSLQR 210 ++ +I VA + +R A + LL FL++ L + I V R L PL L R Sbjct: 83 QDRIIQVAQPKAVRNEMAASMALRSLLPFLVMIPVLAL----FIWIVVGRSLYPLHHLAR 138 Query: 211 NLEQRDHGKLGAIDGIGAPVELQPLIVAMNELMARINKGEQAQQNFMADVAHQLRTPLTG 270 + +R L + G P ELQP++ A+N+L+ R+++ Q+ F+AD AH+LRTPLT Sbjct: 139 AIGRRSSNALEPLPGERYPPELQPMLAALNDLLTRLDQTLVTQRAFVADAAHELRTPLTA 198 Query: 271 LKLQLELLHDKHHDQPDTARSLAMMNSSVERMIRQSRQLLALARSEPGLFESRKLEELSL 330 LKLQL+L+ ++ +D A ++ + R +QLL LAR E + + R +++ L Sbjct: 199 LKLQLQLV-ERENDDRQRATGFRKLHERLNRATHLVQQLLTLARHEYRIAD-RSSQKIDL 256 Query: 331 DKLVEESVQHFIEEADKKQIDLGFDLQ------PARLRGDRFLLSDLIDNLIDNAVRYSP 384 +L V + +A+ K +DLG + A + G++ L L+ NL+DNAVRY+P Sbjct: 257 RQLTARVVSDYAPQAEHKGVDLGIAINDDQGSDAAMITGNQDSLRILLGNLVDNAVRYTP 316 Query: 385 QQG--TVTVRCLEQDGATVLSVEDSGPGIAPEHRELIFDRYYRANDK-IAGSGLGLAIVR 441 G VTV D +L V+D+GPGI + +E +FDR+YR + +GSGLGL I + Sbjct: 317 SHGRVDVTVNTSTADHTVLLRVKDNGPGIPVQDQERVFDRFYRRDGTGESGSGLGLFIAK 376 Query: 442 EIAHDHGGVISVDCKEQGQGTIFTVRFPL 470 IA H I + + G I TVRFPL Sbjct: 377 TIATQHEATIELSTADSKGGLIVTVRFPL 405 >gi|134094769|ref|YP_001099844.1| sensor kinase CopS like [Herminiimonas arsenicoxydans] Length = 458 Score = 120 bits (301), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 99/392 (25%), Positives = 195/392 (49%), Gaps = 30/392 (7%) Query: 96 NHSDTTFFAVRNTQGEILVGDKG------FPQLPESETYDRPFNYDGEMRGEPVRISAIQ 149 NH D + VR+ G+ + G ++P S+T + +D ++ E AI+ Sbjct: 74 NHPDF-YVDVRDLNGKEIYSTFGAFRDAILSRIPSSKTKN---GFDVKI-DEHREFQAIR 128 Query: 150 VRVKNGVIS-VAVAETIRKRDRAHYTILLSFLLLDGALTFGSLSVVMI---AVRRGLRPL 205 +K S V V + K H+ + L+ + +++ VM+ A R+GL PL Sbjct: 129 AELKASAGSPVIVVIAVDKAIHTHFMSMFRTTLMLYVMV-AAIATVMLGWWAARQGLSPL 187 Query: 206 KSLQ---RNLEQRDHGKLGAIDGIGAPVELQPLIVAMNELMARINKGEQAQQNFMADVAH 262 +++ + + ++ + +D + P E+ L V +N ++ R+ F AD+AH Sbjct: 188 RTMAARAQTVTSQNMNERMPVDAV--PTEMTDLAVKLNAMLDRLQNDIARLTEFSADLAH 245 Query: 263 QLRTPLTGLKLQLELLHDKHHDQPDTARSLAMMNSSVERMIRQSRQLLALARSEPGLFES 322 +LRTP++ + Q ++ ++ D SL+ ++R+ +L LA++E GL Sbjct: 246 ELRTPISNMLTQTHVVLNQSRSTADYRDSLSSNAEELQRLGNTISDMLFLAQTENGL-AL 304 Query: 323 RKLEELSLDKLVEESVQHFIEEADKKQIDLGFDLQPARLRGDRFLLSDLIDNLIDNAVRY 382 + +L++ + + ++ + A++K++ L + A + GD+ + ++NL+ NA+RY Sbjct: 305 PSVAKLNMARECQALLEFYEALAEEKKVVLRCE-GDAVVIGDQLMFRRALNNLLSNAIRY 363 Query: 383 SPQQGTVTVRCLEQDGATVLSVEDSGPGIAPEHRELIFDRYYRANDKIAGS-----GLGL 437 +P GT++++ + T ++V++ G I E + +FDR++RA+ S GLGL Sbjct: 364 TPSYGTISIKITSAESGTTITVQNDGEEIPAEIQPHLFDRFFRADKSRKKSESDSAGLGL 423 Query: 438 AIVREIAHDHGGVISVDCKEQGQGTIFTVRFP 469 +I R I HGG +SV ++ T F++ FP Sbjct: 424 SITRAIMQAHGGSVSVVSRD--SKTAFSLYFP 453 >gi|134093857|ref|YP_001098932.1| putative two-component system sensory histidine kinase [Herminiimonas arsenicoxydans] Length = 467 Score = 115 bits (289), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 85/269 (31%), Positives = 139/269 (51%), Gaps = 9/269 (3%) Query: 196 IAVRRGLRPLKSLQRNLEQRDHGKL-GAIDGIGAPVELQPLIVAMNELMARINKGEQAQQ 254 + +RRGL+PL+ + R+ GKL +D GAP EL PLI A N ++ R+ +G Sbjct: 191 VMLRRGLKPLRKMARHAALVRPGKLQHQLDDQGAPSELLPLIHAFNAMLGRLQEGYLRLS 250 Query: 255 NFMADVAHQLRTPLTGLKLQLELLHDKHHDQPDTARSLAMMN-SSVERMIRQSRQLLALA 313 F D+AH+ RTP+T L Q ++ + D + L + N +ER+ R +L LA Sbjct: 251 QFSTDLAHEFRTPVTSLLGQSQVALGRPRS-ADEYKQLVISNMEELERLSRMIDSMLFLA 309 Query: 314 RSEPGLFESRKLEELSLDKLVEESVQHFIEEADKKQIDLGFDLQPARLRGDRFLLSDLID 373 R E + L D+ + + +F E+ ++ + + + D LL + Sbjct: 310 RVEREQMSVARYPLLVQDEF--DRLCNFFEDMSDERGLILSNQGDGIVMADAQLLRRALS 367 Query: 374 NLIDNAVRYSPQQGTVTVRCLEQDGATVLSVEDSGPGIAPEHRELIFDRYYRAN----DK 429 NL+ NA+R++ + T+ +R ++ VLSV ++G I PEH +FDR+YRA+ D Sbjct: 368 NLLSNAIRHADKGSTIELRSRQEAEFVVLSVTNTGATIGPEHMPHLFDRFYRADSARTDS 427 Query: 430 IAGSGLGLAIVREIAHDHGGVISVDCKEQ 458 +GLGL+IVR I H G +V +++ Sbjct: 428 SESTGLGLSIVRAIMTLHHGRATVTSQDK 456 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.135 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 775,108 Number of extensions: 30216 Number of successful extensions: 189 Number of sequences better than 1.0e-08: 23 Number of HSP's gapped: 146 Number of HSP's successfully gapped: 23 Length of query: 472 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 387 Effective length of database: 720,272 Effective search space: 278745264 Effective search space used: 278745264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)