BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3342.p (1177 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094133|ref|YP_001099208.1| putative response regulator rec... 175 1e-44 gi|134094677|ref|YP_001099752.1| putative two-component sensor k... 144 2e-35 gi|134093575|ref|YP_001098650.1| putative two-component hybrid s... 118 2e-27 gi|134094344|ref|YP_001099419.1| two-component sensor [Herminiim... 87 5e-18 gi|134094163|ref|YP_001099238.1| putative two-component histidin... 87 7e-18 >gi|134094133|ref|YP_001099208.1| putative response regulator receiver [Herminiimonas arsenicoxydans] Length = 560 Score = 175 bits (444), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 140/442 (31%), Positives = 214/442 (48%), Gaps = 60/442 (13%) Query: 467 ELQKEDLAKTQVVLVEKATELERANQYKSEFLANMSHELRTPLNSTLILAKLLADNKQGN 526 +L+++ L +T + + K E E AN+ KSEFLA MSHE+RTP+N L + +L Sbjct: 163 DLERQVLERTHDLSLAK-NEAEAANRAKSEFLAVMSHEIRTPMNGMLGMMQL----ALAQ 217 Query: 527 LSD-EQVRFAQTISSAGNDLLALINDILDLSKMEAGKLDIVSESFVVSKLAEELKASFVV 585 SD EQ + +T + LL ++NDILD SK+E+G L+ + +F + K + + Sbjct: 218 ASDVEQREYLETAQYSAEALLTILNDILDFSKLESGHLEFEAVTFDLPKAVDSVIELMSA 277 Query: 586 MAQQKSLGFKVEVEPGVPLRMETDMQRLGQILKNLLSNAIKFTEKGEVSLRIS-LDAGGR 644 Q +L E + +P + D+ RL Q+L NL+ NA+KFTE+G V+L+I L A G Sbjct: 278 RMQGAALSLNAECDADLPRLLTGDVGRLRQVLLNLIGNALKFTEQGSVTLKIERLPASGT 337 Query: 645 IV---FAVRDTGIGIGAEQHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLGGDIE 701 + F V D+GIGI AE+ +F++F QAD S R++GGTGLGLSI + + + G I Sbjct: 338 QIPLRFTVIDSGIGITAEEQTRLFQSFSQADHSISRRFGGTGLGLSICKKIVEMQRGCIG 397 Query: 702 VQSRLGEGSIFTLSLPQVYRPEQAVMRTALPVPAAAAA-TLQAAQVATAPDVRIPGPQVM 760 V+S GEGS F L V PE + PA A+ TL Sbjct: 398 VESTPGEGSRFWFELTFVPAPEPGEKSDIIVAPALPASRTLH------------------ 439 Query: 761 PTPQKRLQDIAIDDDRDRIEAASRLILVIEDDAAFAMILRDLAHEMGFQCVVTLSANEGV 820 IL+ ED+ ++ L + G + + E V Sbjct: 440 -------------------------ILLAEDNEINQKVVVALLKKSGHTVQIAQNGREAV 474 Query: 821 AAAEMYRPSAILMDMNLPDFSGLGVLDQIKRNPR-TRHIPV----HVVSVADYSQEALER 875 A + ILMDM++P+ GL I+ P +P+ V+++D Q ++ Sbjct: 475 LAVQQGVFDVILMDMHMPEMDGLAATRAIRGMPAPACSLPIVALTAAVTLSDI-QTCMDA 533 Query: 876 GAIGYALKPVQREELVGAIRKL 897 G + KP + E L G +++L Sbjct: 534 GMNYFLAKPFRIERLNGILQEL 555 Score = 86.3 bits (212), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 7/116 (6%) Query: 1053 RILVVEDDVRNIFALSSVLEPKGMKVDIARNGREALQALQRSQEQPGAPIDLVLMDIMMP 1112 IL+ ED+ N + ++L+ G V IA+NGREA+ A+Q+ D++LMD+ MP Sbjct: 439 HILLAEDNEINQKVVVALLKKSGHTVQIAQNGREAVLAVQQ------GVFDVILMDMHMP 492 Query: 1113 EMDGLTAMREIRKQ-AIWKRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKL 1167 EMDGL A R IR A LPI+ALTA D + C+ AG N ++AKP +E+L Sbjct: 493 EMDGLAATRAIRGMPAPACSLPIVALTAAVTLSDIQTCMDAGMNYFLAKPFRIERL 548 >gi|134094677|ref|YP_001099752.1| putative two-component sensor kinase (partial) [Herminiimonas arsenicoxydans] Length = 577 Score = 144 bits (364), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 125/443 (28%), Positives = 200/443 (45%), Gaps = 57/443 (12%) Query: 459 LEEQTQLLELQKEDLAKTQVVLVEKATELERANQYKSEFLANMSHELRTPLNSTLILAKL 518 L Q +LL + E +T V L E ANQ K+ ++A +SHELR+PLNS L +++ Sbjct: 91 LNRQNELLTQEIEAHQRTDVALQSAKEAAEFANQAKTRYVAGISHELRSPLNSILGYSQI 150 Query: 519 LADNKQGNLSDEQVRFAQTISSAGNDLLALINDILDLSKMEAGKLDIVSESFVVSKLAEE 578 L N+ +L+ QTI +G LL L++++LDL+++EA ++ + ++S E+ Sbjct: 151 LLKNE--HLAAAPRTAIQTIHRSGEHLLGLVDELLDLARIEADRMRLEPAPILLSAFLED 208 Query: 579 LKASFVVMAQQKSLGFKVEVEPGVPLRMETDMQRLGQILKNLLSNAIKFTEKGEVSLRIS 638 L + A+ K L + + D +RL QI NLL+NA++FT+ G V+L + Sbjct: 209 LLSMVRPQAEAKGLKLLCTYNGKISRYVLADGKRLRQIFINLLTNAVRFTDDGSVTLHVE 268 Query: 639 LDAGGRIVFAVRDTGIGIGAEQHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLGG 698 + F V DTGIGI + Q IF+ F + R G GLGL+I+ L L+ G Sbjct: 269 CSPAS-VRFDVVDTGIGIAVQDRQRIFQPFERGAAGRLRGEPGAGLGLAITEKLILLMNG 327 Query: 699 DIEVQSRLGEGSIFTLSLPQVYRPEQAVMRTALPVPAAAAATLQAAQVATAPDVRIPGPQ 758 + + S G+GS F + LP I + Sbjct: 328 SLNLVSMQGQGSTFIVRLPL---------------------------------TEITAFE 354 Query: 759 VMPTPQKRLQDIAIDDDRDRIEAA--SRLILVIEDDAAFAMILRDLAHEMGFQCVVTLSA 816 +P RD I A +R +LV++D +L + +GF S Sbjct: 355 SLP-------------QRDVIGHAGPARTLLVVDDQPVQRHMLTGMLIPLGFNVREAASG 401 Query: 817 NEGVAAAEMYRPSAILMDMNLPDFSGLGVLDQIKRNPRTRHIPVHVVSVADYSQEALER- 875 NE + + + P AIL+D+ + G Q+ R +P+ +S AD + E+ Sbjct: 402 NECLDLLQDFAPDAILLDIGMDGMDGWETARQV-RAAGHAAVPIIFIS-ADLFENDPEKL 459 Query: 876 ---GAIGYALKPVQREELVGAIR 895 G + KPV EL+ A++ Sbjct: 460 RLAGCQAFVGKPVLESELMLALQ 482 Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 63/120 (52%), Gaps = 8/120 (6%) Query: 1052 RRILVVEDDVRNIFALSSVLEPKGMKVDIARNGREALQALQRSQEQPGAPIDLVLMDIMM 1111 R +LVV+D L+ +L P G V A +G E L LQ AP D +L+DI M Sbjct: 369 RTLLVVDDQPVQRHMLTGMLIPLGFNVREAASGNECLDLLQDF-----AP-DAILLDIGM 422 Query: 1112 PEMDGLTAMREIRKQAIWKRLPIIALTAKAMKDDQEKCLAAGANDYIAKP-LDVEKLLSL 1170 MDG R++R A +PII ++A ++D EK AG ++ KP L+ E +L+L Sbjct: 423 DGMDGWETARQVRA-AGHAAVPIIFISADLFENDPEKLRLAGCQAFVGKPVLESELMLAL 481 >gi|134093575|ref|YP_001098650.1| putative two-component hybrid sensor and regulator [Herminiimonas arsenicoxydans] Length = 468 Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 131/511 (25%), Positives = 217/511 (42%), Gaps = 79/511 (15%) Query: 400 RTRLEELLEETQRQSEELQAQQEELRVNNEELEEQGQALKASQLRLETQQAELEETNAQL 459 R + +LL R++E+L+ + +L +EL+E + S+ LE +L E N Sbjct: 30 RQTIADLLLRIDREAEQLRTKTADLLTQVDELQE----VTKSKQVLEALVLQLREAN--- 82 Query: 460 EEQTQLLELQKEDLAKTQVVLVEKATELERANQYKSEFLANMSHELRTPLNSTLILAKLL 519 E L +D+ + E AN + EFL+ ++HELR+PL + A LL Sbjct: 83 -ENLVLAAFGAQDMQ----------AKAESANHRQEEFLSMLAHELRSPLAPIAMAADLL 131 Query: 520 ADNKQGNLSDEQVRFAQTISSAGNDLLALINDILDLSKMEAGKLDIVSESFVVSKLAEEL 579 K + IS + L++D+LD S++ G + + S ++S++ + Sbjct: 132 G--KITTAHPMLPKLYGIISRQVGHMAHLVDDLLDASRVSTGNITLQKRSLLLSEIIDSA 189 Query: 580 KASFVVMAQQKSLGFKVEVEPGVPLRMETDMQRLGQILKNLLSNAIKFTE-KGEVSLRIS 638 + Q++ + + P + + D+ RL Q NL+ NA KFT G + + Sbjct: 190 VETSQPFINQRNQQLTITL-PEDTVVINGDLVRLAQAFANLIINATKFTPVDGHIDISAQ 248 Query: 639 LDAGGRIVFAVRDTGIGIGAEQHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLGG 698 + A + +++D G+GI + FIF+ FRQ S R GG G+GLS+ R + + GG Sbjct: 249 VLAD-VVKVSIKDNGMGIAPDIQPFIFDLFRQGPHSLDRSQGGLGIGLSLVRTVVQMHGG 307 Query: 699 DIEVQSR-LGEGSIFTLSLPQVYRPEQAVMRTALPVPAAAAATLQAAQVATAPDVRIPGP 757 + V S LG GS F + LP + T L + ++ Sbjct: 308 TVSVYSAGLGCGSEFFVVLP---------ISTELMTDDGSTSS----------------- 341 Query: 758 QVMPTPQKRLQDIAIDDDRDRIEAASRLILVIEDDAAFAMILRDLAHEMGFQCVVTLSAN 817 + P P R IL+IED+ + IL +L G Sbjct: 342 SLDPVPGCR-------------------ILLIEDNVSANEILSELLTMEGHTITSAFDGT 382 Query: 818 EGVAAAEMYRPSAILMDMNLPDFSGLGVLDQIKRNPRTRHIPVHVVSVADYSQE-----A 872 G+ A+ IL D+ LP G V+ +++ N + +P+ ++++ YSQ+ A Sbjct: 383 SGLEMAQNNIYDIILCDIGLPGIDGYEVVKRLRLN-TVKAVPL-CIAISGYSQQENRSNA 440 Query: 873 LERGAIGYALKPVQREELVGAIRKLEAKFLQ 903 G Y +KPV LV I KFLQ Sbjct: 441 ERVGFDHYLVKPVAITTLVNLI---SPKFLQ 468 >gi|134094344|ref|YP_001099419.1| two-component sensor [Herminiimonas arsenicoxydans] Length = 430 Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 125/245 (51%), Gaps = 11/245 (4%) Query: 475 KTQVVLVEKATELERANQYKSEFLANMSHELRTPLNSTLILAKLLADNKQGNLSDEQVRF 534 + Q+++ ATE ER + +F+AN SHELRTPL T+I L Q +L D+ +R Sbjct: 187 RRQILVTHDATESERIEMMRRDFIANASHELRTPL--TVINGFLEIAQAQPDL-DQAIRM 243 Query: 535 A--QTISSAGNDLLALINDILDLSKMEAGKLDIVSESFVVSKLAEELKASFVVMAQQKSL 592 + + + G + L+ D+L L+++E+ + E + L E+++ ++ + Sbjct: 244 SHLKLMIEQGQRMQNLVEDMLTLTRLESIDYPLRPEHVNIHNLLEQIRQEAEALSGGRH- 302 Query: 593 GFKVEVEPGVPLRMETDMQRLGQILKNLLSNAIKFTE-KGEVSLRISLDAGGRIVFAVRD 651 ++ + P +E L NL+SNA+++T G + ++ A G F+V+D Sbjct: 303 --EISLTIDGP-DIEGSADELRSAFSNLVSNAVRYTPIHGRIDIKWQNTAAGP-QFSVKD 358 Query: 652 TGIGIGAEQHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLGGDIEVQSRLGEGSI 711 TGIG+ E + E F + D S R+ GTGLGL+I + + G + ++S+ GS Sbjct: 359 TGIGMRPEHLVRLTERFYRVDKSRSRETQGTGLGLAIVKHVLLRHGAVLAIESQPDVGST 418 Query: 712 FTLSL 716 F++ Sbjct: 419 FSVQF 423 >gi|134094163|ref|YP_001099238.1| putative two-component histidine kinase sensor protein [Herminiimonas arsenicoxydans] Length = 463 Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 120/240 (50%), Gaps = 13/240 (5%) Query: 482 EKATELERANQYKSEFLANMSHELRTPLNSTLILAKLLADNKQGNLSDEQVRFAQTISSA 541 + A +LE N+ F ++SH+LR+PL + +++ ++ L DE R I + Sbjct: 230 KNAAQLELTNKELESFSYSVSHDLRSPLRAIDGYSRMFEEDFADRLDDEGRRLLSVIRVS 289 Query: 542 GNDLLALINDILDLSKMEAGKLDIVSESFVVSKLAEELKASFVVMAQQKSLGFKVEVEPG 601 + LI+D+L S+M G+ + S ++ L +E+ V + + L K P Sbjct: 290 SKKMGQLIDDLLAFSRM--GRKPVDSAKVDMNALVDEVWTE-VCASSKTVLPLKKTNLPA 346 Query: 602 VPLRMETDMQRLGQILKNLLSNAIKFTEKGEVSLRISLDAG---GRIVFAVRDTGIGIGA 658 V D L Q+ NLL+NA+K++ K E + + + A +V+ VRD G+G Sbjct: 347 VW----GDQALLRQVWMNLLANAVKYSSKKEEQI-VEITAKQSEHEVVYTVRDNGVGFDM 401 Query: 659 EQHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLGGDIEVQSRLGEGSIFTLSLPQ 718 + +F F++ T ++ GTG+GL+I++ + GG I +S+ E +IF SLP+ Sbjct: 402 RFYNKLFGVFQRL--HTENEFPGTGVGLAIAQRVIVRHGGRIWAESKPDEYTIFNFSLPK 459 Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 2/151 (1%) Query: 46 IALFTYEASVSRGEAASAVSHTMKVREQLQAVVSTLKDAETSQRGFLLTGTESYLSPYNQ 105 I+ T+ + ++ V HT V +Q+ VVS LKDAE++QRG+L+TG +L + Sbjct: 31 ISFITFNSVDQFASSSRLVEHTHLVIKQIDQVVSDLKDAESTQRGYLITGDGIFLKTHYD 90 Query: 106 ARAALPGEIAKLRELLADNPDQLQRLAQVERVVGDKLDELGETIS--RRRNGDTVGALAV 163 A LP +IA LR L DNP Q + + E ++ K+ + I+ RN +A Sbjct: 91 ILAQLPSQIATLRGLTYDNPAQRKSIDVFEGLIDKKIAVMRSGINALEERNAFHSDEIAA 150 Query: 164 VQSDRGKMFMDRVRVLTRDMEEQERDLLASR 194 + G++ MD++R + M E LL R Sbjct: 151 LVGGEGRLAMDQLREQSSLMIMVEEKLLLQR 181 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.133 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,792,658 Number of extensions: 69132 Number of successful extensions: 531 Number of sequences better than 1.0e-08: 41 Number of HSP's gapped: 496 Number of HSP's successfully gapped: 44 Length of query: 1177 Length of database: 1,000,347 Length adjustment: 92 Effective length of query: 1085 Effective length of database: 697,207 Effective search space: 756469595 Effective search space used: 756469595 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)