BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3340.p
         (218 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094530|ref|YP_001099605.1| chemotaxis-specific methylester...    77   6e-16

>gi|134094530|ref|YP_001099605.1| chemotaxis-specific methylesterase
           [Herminiimonas arsenicoxydans]
          Length = 358

 Score = 77.4 bits (189), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 84/181 (46%), Gaps = 9/181 (4%)

Query: 20  SIEAIVIGASAGGVEALSEILPALRRGAAVATMVVLHIPRERPSLLASIFADR----CAQ 75
           S + I+IGAS GG EA+ + L  +        ++  H+P   P    S FA R    C  
Sbjct: 162 SEKLIIIGASTGGTEAIKDFLMQMPSDCP-GILITQHMP---PGFTKS-FAQRLDSLCKI 216

Query: 76  PVVEAQDKEPAQAGVIYFAPPDYHLLVDRGEEGPLLAMSNDELVNFSRPAIDVLFESAAD 135
            V E++  E    G  Y AP   HL + R     +  +     VN  RP++DVLF SAA 
Sbjct: 217 DVKESEGGERVLPGHAYLAPGHSHLQLVRSGANYMTQLDQGPPVNRHRPSVDVLFHSAAV 276

Query: 136 VYGPQLLGIVLTGGNHDGAAGLQAIARAGGVTVVQSPQQAQVPYMPAQALALGNIDYVLT 195
             G   +G++LTG   DGA G+  +  AG     Q      V  MP +A+A+G    V +
Sbjct: 277 HAGKNAVGVILTGMGKDGALGMLEMKNAGAYNFAQDEASCVVFGMPREAIAVGATHEVGS 336

Query: 196 L 196
           L
Sbjct: 337 L 337


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.136    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 433,991
Number of extensions: 18000
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 140
Effective length of database: 743,337
Effective search space: 104067180
Effective search space used: 104067180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)