BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3339.p (372 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093335|ref|YP_001098410.1| putative two-component sensor h... 132 2e-32 gi|134093575|ref|YP_001098650.1| putative two-component hybrid s... 82 3e-17 gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two... 74 2e-14 gi|134094769|ref|YP_001099844.1| sensor kinase CopS like [Hermin... 73 2e-14 gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two... 68 7e-13 >gi|134093335|ref|YP_001098410.1| putative two-component sensor histidine kinase [Herminiimonas arsenicoxydans] Length = 365 Score = 132 bits (333), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 124/228 (54%), Gaps = 7/228 (3%) Query: 150 TLRMNEMFVAILGHDLRNPLSAVVMAATLLQRT-YKEEVAQKASQQILNGGKRMAKLIEN 208 T+R + F+AILGHDLR+PL+A+ MA L E + ++ M ++ + Sbjct: 135 TVRTRDTFLAILGHDLRSPLAAMAMAGHYLALPGVGTEATLRVGSRVKRSAATMTAMVND 194 Query: 209 MLDLARARLAGGIPLARASACLGEITERVVQEYQATYPGSVIERRIEGDDNGFWDGDRLA 268 ML+ AR +L G +P+ A L +I + + + +A +P E GD +G +D RL Sbjct: 195 MLEYARGQLGGEMPITFEQADLQDIFQASLHDARAVHPECPFELSTTGDMSGSFDSVRLQ 254 Query: 269 QVAANLLGNALQHGVAGSPICIGLDGRSEHEVVLTIANRG-VIPAELLPVIFDPFRGGGR 327 QV NLL NA Q+ P+ I +G++E V + I N G IP E L IF P Sbjct: 255 QVFTNLLNNAAQYRGKEHPVTILAEGKTE-SVTIQIKNFGPAIPPESLQTIFQPLVQLSV 313 Query: 328 E---IGR-KEGLGLGLFIAQQIVKAHGGSITMTSDDQVQTMVTVRLPR 371 E GR LGLGLFIA++I AHGG+I+ TSD+ T++T+ LPR Sbjct: 314 EEEQAGRPSTSLGLGLFIAREITLAHGGTISATSDETNGTVMTLELPR 361 >gi|134093575|ref|YP_001098650.1| putative two-component hybrid sensor and regulator [Herminiimonas arsenicoxydans] Length = 468 Score = 82.4 bits (202), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 79/261 (30%), Positives = 130/261 (49%), Gaps = 45/261 (17%) Query: 132 QLYRQKQLL---ALELRERTETLRM------------------NEMFVAILGHDLRNPLS 170 ++ + KQ+L L+LRE E L + E F+++L H+LR+PL+ Sbjct: 63 EVTKSKQVLEALVLQLREANENLVLAAFGAQDMQAKAESANHRQEEFLSMLAHELRSPLA 122 Query: 171 AVVMAATLLQR-TYKEEVAQKASQQILNGGKRMAKLIENMLDLARARLAGGIPLARASAC 229 + MAA LL + T + K I MA L++++LD +R G I L + S Sbjct: 123 PIAMAADLLGKITTAHPMLPKLYGIISRQVGHMAHLVDDLLDASRVS-TGNITLQKRSLL 181 Query: 230 LGEITERVVQEYQATYPGSVIERRIE------GDDNGFWDGD--RLAQVAANLLGNALQH 281 L EI + V+ Q I +R + +D +GD RLAQ ANL+ NA + Sbjct: 182 LSEIIDSAVETSQP-----FINQRNQQLTITLPEDTVVINGDLVRLAQAFANLIINATKF 236 Query: 282 GVAGSPI--CIGLDGRSEHEVV-LTIANRGV-IPAELLPVIFDPFRGGGREIGRKE-GLG 336 +P+ I + + +VV ++I + G+ I ++ P IFD FR G + R + GLG Sbjct: 237 ----TPVDGHIDISAQVLADVVKVSIKDNGMGIAPDIQPFIFDLFRQGPHSLDRSQGGLG 292 Query: 337 LGLFIAQQIVKAHGGSITMTS 357 +GL + + +V+ HGG++++ S Sbjct: 293 IGLSLVRTVVQMHGGTVSVYS 313 >gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation [Herminiimonas arsenicoxydans] Length = 921 Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 107/227 (47%), Gaps = 5/227 (2%) Query: 147 RTETLRMNEMFVAILGHDLRNPLSAVV-MAATL-LQRTYKEEVAQKASQQILNGGKRMAK 204 R E+ R+ ++ L HDLR PL+++V ++ +L + + Q+ +Q + + +RM+ Sbjct: 678 RMESERLRNSLLSALSHDLRTPLTSLVGLSESLTMSKPPLTSSQQELAQALHDEARRMSN 737 Query: 205 LIENMLDLARARLAGGIPLARASACLGEITERVVQEYQATYPGSVIERRIEGDDNGF-WD 263 L+ N+LD+AR + +G + E+ ++ Q+ I+ R+ D +D Sbjct: 738 LVSNLLDMARIQ-SGEVKFNLQWLQFEEVVGSALRASQSAIAHHEIKTRLAPDLPLVRFD 796 Query: 264 GDRLAQVAANLLGNALQHGVAGSPICIGLDGRSEHEVVLTIANRGVIPAELLPVIFDPFR 323 + +V NL+ NA ++ AGS I I + V N +PA IFD F Sbjct: 797 AVLIERVLCNLIENAAKYTPAGSRIVIAAEISGRFLEVSVYDNGPGLPAGQEEAIFDKFT 856 Query: 324 GGGREIGRKEGLGLGLFIAQQIVKAHGGSITMTSDDQVQTMVTVRLP 370 G RE G+GLGL I + IV+AH G+I + LP Sbjct: 857 RGERE-SATPGVGLGLAICRAIVEAHQGTIRAAHSPDGGASINFTLP 902 >gi|134094769|ref|YP_001099844.1| sensor kinase CopS like [Herminiimonas arsenicoxydans] Length = 458 Score = 72.8 bits (177), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 115/248 (46%), Gaps = 30/248 (12%) Query: 138 QLLALELRERTETLRMNEMFVAILGHDLRNPLSA------VVMAATLLQRTYKEEVAQKA 191 +L A+ R + + R+ E F A L H+LR P+S VV+ + Y++ ++ A Sbjct: 221 KLNAMLDRLQNDIARLTE-FSADLAHELRTPISNMLTQTHVVLNQSRSTADYRDSLSSNA 279 Query: 192 SQQILNGGKRMAKLIENMLDLARARLAGGIP------LARASACLGEITERVVQEYQATY 245 + +R+ I +ML LA+ +P +AR L E E + +E + Sbjct: 280 EEL-----QRLGNTISDMLFLAQTENGLALPSVAKLNMARECQALLEFYEALAEEKKVVL 334 Query: 246 PGSVIERRIEGDDNGFWDGDRLAQVAANLLGNALQHGVAGSPICIGLDGRSEHEVVLTIA 305 R EGD D + NLL NA+++ + I I + +E +T+ Sbjct: 335 -------RCEGDAVVIGDQLMFRRALNNLLSNAIRYTPSYGTISIKITS-AESGTTITVQ 386 Query: 306 NRGV-IPAELLPVIFDPF--RGGGREIGRKEGLGLGLFIAQQIVKAHGGSITMTSDDQVQ 362 N G IPAE+ P +FD F R+ + GLGL I + I++AHGGS+++ S D + Sbjct: 387 NDGEEIPAEIQPHLFDRFFRADKSRKKSESDSAGLGLSITRAIMQAHGGSVSVVSRDS-K 445 Query: 363 TMVTVRLP 370 T ++ P Sbjct: 446 TAFSLYFP 453 >gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two-component regulatory system with QseB, regulates flagella and motility by quorum sensing [Herminiimonas arsenicoxydans] Length = 430 Score = 68.2 bits (165), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 117/238 (49%), Gaps = 25/238 (10%) Query: 149 ETLRMNEMFVAILGHDLRNPLSAVVMAATLLQRTYKEEVAQKASQQILNGGKRMAKLIEN 208 +TL FVA H+LR PL+A+ + L++R + +++ R L++ Sbjct: 176 QTLVTQRAFVADAAHELRTPLTALKLQLQLVERENDDRQRATGFRKLHERLNRATHLVQQ 235 Query: 209 MLDLARA--RLAGGIPLARASAC--LGEITERVVQEY--QATYPGSVIERRI---EGDDN 259 +L LAR R+A R+S L ++T RVV +Y QA + G + I +G D Sbjct: 236 LLTLARHEYRIAD-----RSSQKIDLRQLTARVVSDYAPQAEHKGVDLGIAINDDQGSDA 290 Query: 260 GFWDG--DRLAQVAANLLGNALQHGVAGSPICIGLD-GRSEHEVVLTIANRGV-IPAELL 315 G D L + NL+ NA+++ + + + ++ ++H V+L + + G IP + Sbjct: 291 AMITGNQDSLRILLGNLVDNAVRYTPSHGRVDVTVNTSTADHTVLLRVKDNGPGIPVQDQ 350 Query: 316 PVIFDPF--RGGGREIGRKEGLGLGLFIAQQIVKAHGGSITM-TSDDQVQTMVTVRLP 370 +FD F R G E G GLGLFIA+ I H +I + T+D + +VTVR P Sbjct: 351 ERVFDRFYRRDGTGE----SGSGLGLFIAKTIATQHEATIELSTADSKGGLIVTVRFP 404 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.140 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 582,138 Number of extensions: 21268 Number of successful extensions: 175 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 183 Number of HSP's successfully gapped: 18 Length of query: 372 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 289 Effective length of database: 726,862 Effective search space: 210063118 Effective search space used: 210063118 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)