BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3335.p (349 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096339|ref|YP_001101414.1| hypothetical protein HEAR3185 [... 111 5e-26 gi|134093574|ref|YP_001098649.1| hypothetical protein HEAR0293 [... 111 5e-26 gi|134094611|ref|YP_001099686.1| hypothetical protein HEAR1387 [... 107 8e-25 gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [... 107 8e-25 gi|134094936|ref|YP_001100011.1| hypothetical protein HEAR1729 [... 105 4e-24 >gi|134096339|ref|YP_001101414.1| hypothetical protein HEAR3185 [Herminiimonas arsenicoxydans] Length = 412 Score = 111 bits (278), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 121/226 (53%), Gaps = 7/226 (3%) Query: 114 YASLATAILAWWLLEAQFQPQSDLVTILA-CLPMMALYPLALGQSTYAMSKKLAERSRQF 172 YAS+ A A F +S + +LA LP AL + + A+ K + R Sbjct: 182 YASVVAAHYVRHGSNAIFALESMQLLVLAVTLPGFALLADRVQRLHNALFKA-NRKIRNI 240 Query: 173 EIVSQLDGLTLLFNRRYWENLLAAEFERRRQERAPTHQAFLLLLDLDHFKSINDTHGHLI 232 E +Q D L FNRRY + A E ++R + A T L ++DLDHFK IND GHL Sbjct: 241 EEDAQRDALLGCFNRRYI--VAALEQQKRLADDAGT-PLCLAVIDLDHFKRINDEAGHLG 297 Query: 233 GDEVLRNFSRLLRANLREDDLIGRYGGEEFVVILRDIQPGEALALSQRLVE-AARAANDE 291 GDEVLR F+R+ + N+R D+ GRYGGEEF+++L D AL +++R+ E R A D+ Sbjct: 298 GDEVLRTFARIAQDNVRAGDIFGRYGGEEFLLVLPDTSLLAALNVAERIREQVERFAWDK 357 Query: 292 NNLYGCTVSAGLVPFSTDMEAYFVWLQRADHAMYCAKESGRDRLVV 337 TVS GL E+ R D AMY AK+ GR+++VV Sbjct: 358 KLRNRVTVSIGLTQ-QIPGESVLDLFSRTDTAMYMAKQGGRNQVVV 402 >gi|134093574|ref|YP_001098649.1| hypothetical protein HEAR0293 [Herminiimonas arsenicoxydans] Length = 556 Score = 111 bits (278), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 71/180 (39%), Positives = 103/180 (57%), Gaps = 11/180 (6%) Query: 165 LAERSR---QFEIVSQLDGLTLLFNRRYWENLLAAEFERRRQERAPTHQAFLLLLDLDHF 221 + ER R + + + +D LT L NRRY+ + E R R R + +L+ DLDHF Sbjct: 378 ITERKRIEIELQGFATIDFLTQLPNRRYFMTRMEEELARTR--RIDGARTAVLMCDLDHF 435 Query: 222 KSINDTHGHLIGDEVLRNFSRLLRANLREDDLIGRYGGEEFVVILRDIQPGEALALSQR- 280 K+IND++GH IGD VL++F+ +LR LR +D++GR GGEEF V+L D EA +QR Sbjct: 436 KTINDSYGHAIGDLVLKHFAVILRNALRRNDMVGRVGGEEFAVVLFDAGVAEAEIFAQRV 495 Query: 281 ---LVEAARAANDENNLYGCTVSAGLVPFSTDMEAYFVWLQRADHAMYCAKESGRDRLVV 337 L E A ++N TVS G+ V L R+D A+Y AK++GR+R+ + Sbjct: 496 RSQLAEIPLIALNQN--INVTVSIGIAMMHASDANIDVSLSRSDTALYRAKQAGRNRIEI 553 >gi|134094611|ref|YP_001099686.1| hypothetical protein HEAR1387 [Herminiimonas arsenicoxydans] Length = 832 Score = 107 bits (267), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 74/197 (37%), Positives = 103/197 (52%), Gaps = 15/197 (7%) Query: 154 LGQSTYAMSKKLAERSRQFEIVSQLDGLTLLFNRRYWENLLAAEFERRRQERAPTHQAFL 213 LG + +K+ E Q E + D LT L NRRY N LA E RQ+++ + Sbjct: 381 LGVTRDITKRKMTEL--QIEYQAMHDMLTDLPNRRYLVNTLATAMETSRQQQS---SLTM 435 Query: 214 LLLDLDHFKSINDTHGHLIGDEVLRNFSRLLRANLREDDLIGRYGGEEFVVILRDIQPGE 273 L DLD FKS+NDTHGH GD+ L S+ + A L E D + R+GG EFV++ Sbjct: 436 LFCDLDFFKSVNDTHGHDFGDQCLLEISKRIVAVLPESDFVARFGGNEFVIL-----TNS 490 Query: 274 ALALSQRLVEA-ARAAND----ENNLYGCTVSAGLVPFSTDMEAYFVWLQRADHAMYCAK 328 +LA S +A ARA ++ EN VS G+ S D + ++ AD AMY AK Sbjct: 491 SLAESSIKAKAIARAVSERLVFENVAVKIQVSIGIAQLSPDHQVPADLIREADAAMYQAK 550 Query: 329 ESGRDRLVVWNERLERK 345 E GR+R +++ L+ K Sbjct: 551 ERGRNRTEIYDAALQSK 567 >gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [Herminiimonas arsenicoxydans] Length = 568 Score = 107 bits (267), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 107/191 (56%), Gaps = 11/191 (5%) Query: 153 ALGQSTYAMSKKLAERSRQF-------EIVSQLDGLTLLFNRRYWENLLAAEFERRRQER 205 AL QS + K++ R+ + E +++ D LT L NR + LA EF R ++ + Sbjct: 372 ALAQSNQELEAKVSARTAELQELNITLEQLARTDALTGLANRMHTNERLAEEFARFKRSK 431 Query: 206 APTHQAFLLLLDLDHFKSINDTHGHLIGDEVLRNFSRLLRANLREDDLIGRYGGEEFVVI 265 P +L+LD+D FK +ND +GH +GDEVL++ + +L A +R+ D +GR+GGEEF+ I Sbjct: 432 IPY---CILMLDVDFFKRVNDIYGHGVGDEVLKHVASILSATVRKTDFVGRHGGEEFLSI 488 Query: 266 LRDIQPGEALALSQRLVEAARAANDENNLYGCTVSAGLVPFSTDMEAYFVWLQRADHAMY 325 L A+ +++++ + + TVS G+ + + V + RAD MY Sbjct: 489 LPMTDSSAAMVVAEKIRNTIE-STPIGPVGNLTVSIGVQEVTVNDINEDVAVTRADECMY 547 Query: 326 CAKESGRDRLV 336 AK+SGR++++ Sbjct: 548 QAKKSGRNKVI 558 >gi|134094936|ref|YP_001100011.1| hypothetical protein HEAR1729 [Herminiimonas arsenicoxydans] Length = 709 Score = 105 bits (262), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/192 (39%), Positives = 106/192 (55%), Gaps = 15/192 (7%) Query: 164 KLAERSRQFEIVSQL--DGLTLLFNRRYWENLLAAEFERRRQERAPTHQAFLLLLDLDHF 221 K E+ +Q EI Q D LT L NRR +E L + R + TH +L +DLD F Sbjct: 264 KQKEQEKQIEISYQASHDELTGLINRREFERCLQSALHDIRTQHG-THT--ILYMDLDQF 320 Query: 222 KSINDTHGHLIGDEVLRNFSRLLRANLREDDLIGRYGGEEFVVILRDIQPGEALALSQRL 281 K +NDT GH GD +L+ +R+L+ LR++D++ R GG+EF V+LR+ AL +++ L Sbjct: 321 KIVNDTCGHHAGDILLQQLTRVLKEKLRQNDILARLGGDEFGVLLRNCPAEPALNVAESL 380 Query: 282 VEAAR----AANDENNLYGCTVSAGLVPFSTDMEAYFVWLQRADHAMYCAKESGRDRLVV 337 + A A ND+ L+ VS GL+ FS D + L D A Y AKE GR+R+ V Sbjct: 381 RQTASEFRFAWNDK--LFSVGVSIGLLTFSDDELSLNEILSIVDGACYLAKEKGRNRIHV 438 Query: 338 WN----ERLERK 345 + E ERK Sbjct: 439 CHPDDGELSERK 450 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.327 0.140 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 608,706 Number of extensions: 22595 Number of successful extensions: 156 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 125 Number of HSP's successfully gapped: 29 Length of query: 349 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 266 Effective length of database: 726,862 Effective search space: 193345292 Effective search space used: 193345292 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)