BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3333.p
         (177 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093885|ref|YP_001098960.1| putative signal peptide [Hermin...   184   2e-48

>gi|134093885|ref|YP_001098960.1| putative signal peptide
           [Herminiimonas arsenicoxydans]
          Length = 170

 Score =  184 bits (467), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 85/167 (50%), Positives = 112/167 (67%)

Query: 11  LARLLRHLRMSRAAARRAFPSTTLKAIQASIGAGEQTHRAQVRVIVEAALSLGAVRRGET 70
            +R LRH   +++  ++AFPS TL AIQ  I AGE  HRA++R+IVE +L L  V  G T
Sbjct: 4   FSRALRHAGTTKSHGKKAFPSATLSAIQTIIAAGETQHRAEIRLIVEPSLDLTEVLSGMT 63

Query: 71  ARQRAHELFARYRIWDTEENCGVLVYINLADRKVEIIADRGISARVAREQWQQLCRTMTA 130
           +R+RA ELF  Y IWDTEENCG+L+YINLAD +VEIIADRGI+  V    W  +C+TMT 
Sbjct: 64  SRERARELFTHYHIWDTEENCGILIYINLADHQVEIIADRGIARLVPPADWHAVCKTMTD 123

Query: 131 GYAQGHYERSTLQALADLHDILRTVLPRGNDTDGKVTNELSDKPLLL 177
           G+AQ +Y  S L  L  L+ +L+   P G    G   N+LS++P+LL
Sbjct: 124 GFAQKNYHDSVLNGLQQLNTLLQKYFPEGESPQGPQPNQLSNQPILL 170


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 318,871
Number of extensions: 11513
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 101
Effective length of database: 749,927
Effective search space: 75742627
Effective search space used: 75742627
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)