BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3332.p
         (284 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093886|ref|YP_001098961.1| putative glycine rich transmemb...   216   1e-57

>gi|134093886|ref|YP_001098961.1| putative glycine rich
           transmembrane protein [Herminiimonas arsenicoxydans]
          Length = 267

 Score =  216 bits (549), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 125/234 (53%), Positives = 156/234 (66%), Gaps = 14/234 (5%)

Query: 5   LLTCWLLACIALVGPARADDGLVAVPPLSAHVIDQIHLLQPQQRQALEGVLAEIEQRTGS 64
           LL C L     L G       LVAVP L   V D   +L   QR  LE VLA+ E RTGS
Sbjct: 7   LLACTLAFFCVLAGA----QNLVAVPQLKERVTDLAGMLNAGQRTTLENVLADYETRTGS 62

Query: 65  QIAVLLMASTAPEAIEQYSIRVAEAWKLGRKGVDDGVILIVAKDNPKSLRRLRIEAGRGV 124
           QIAVLL+ ST PE IEQYSIRVA+ WKLGRKGVDDGVIL++AK+N  +  R+RIE GRGV
Sbjct: 63  QIAVLLIDSTEPETIEQYSIRVADTWKLGRKGVDDGVILLIAKNNSTASGRMRIETGRGV 122

Query: 125 QGSLTDAQSKRILEDVIAPHFRQNDFYGGLAAGVTAITTLLEQEQLP-PAKRQAGAAHAD 183
           QG LTDAQSKR+L+DVIAPHFRQND+YGGLA+G++ IT+LL++E  P PA  Q G A  +
Sbjct: 123 QGVLTDAQSKRVLQDVIAPHFRQNDYYGGLASGISVITSLLDKEAFPEPA--QGGKAQNN 180

Query: 184 NSGGWITLMVIVLFLVVFFAMLLKSRRTARNNLASNDWGRGSSTTAGVIIGSLV 237
           +  GW   +     +V+    +L+SR   R   +S+ WG     +AGVI+G ++
Sbjct: 181 DGFGWGPFIFFAFLIVM---TMLRSRGGGRRGHSSDGWG----NSAGVILGGMI 227


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 438,932
Number of extensions: 16646
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 203
Effective length of database: 733,452
Effective search space: 148890756
Effective search space used: 148890756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)