BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3331.p
         (197 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093887|ref|YP_001098962.1| LemA family protein [Herminiimo...   355   e-100
gi|134093468|ref|YP_001098543.1| hypothetical protein HEAR0180 [...   101   3e-23

>gi|134093887|ref|YP_001098962.1| LemA family protein [Herminiimonas
           arsenicoxydans]
          Length = 197

 Score =  355 bits (912), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 170/197 (86%), Positives = 181/197 (91%)

Query: 1   MKKLFAWLAIAITALTLSGCGYNEFQAKDEATKAAWGEVVNQYQRRADLIPNLVNTVKGY 60
           M  L  WL IA  A  LS CGYN+FQ KDEATKAAW EVVNQYQRRADLIPNLVNTVKGY
Sbjct: 1   MATLLKWLTIAALASMLSACGYNDFQTKDEATKAAWSEVVNQYQRRADLIPNLVNTVKGY 60

Query: 61  ASHEKDTLEAVTRARAAATSFQITPEVLNDPKAFAKFQEVQGQLSSALSRLMAVSENYPQ 120
           ASHE++TLEAVT+ARAAATSFQITPEVLNDP+AFAKFQ+VQG+LSSALSRLMAVSENYPQ
Sbjct: 61  ASHERETLEAVTKARAAATSFQITPEVLNDPQAFAKFQQVQGELSSALSRLMAVSENYPQ 120

Query: 121 LKADTSFRDLQSQLEGTENRITVARQRYIAAVKDYNILARSFPTNITAKLFSYEVKPSFT 180
           LKADTSFRDLQSQLEGTENRITVARQRYIAAV++YN+LARSFPTNITAK+FSY VKPSFT
Sbjct: 121 LKADTSFRDLQSQLEGTENRITVARQRYIAAVQEYNVLARSFPTNITAKIFSYPVKPSFT 180

Query: 181 VENEKAISTAPTVNFGK 197
           VENEKAIS  P VNFGK
Sbjct: 181 VENEKAISAPPAVNFGK 197


>gi|134093468|ref|YP_001098543.1| hypothetical protein HEAR0180
           [Herminiimonas arsenicoxydans]
          Length = 196

 Score =  101 bits (251), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 91/170 (53%), Gaps = 3/170 (1%)

Query: 1   MKKLFAWLAIAITALTLSGCG-YNEFQAKDEATKAAWGEVVNQYQRRADLIPNLVNTVKG 59
           M  +F  LAI +  +   G G YN   A     + A+ ++  Q +RR DLIPNLV T K 
Sbjct: 1   MAAVFVLLAI-MAIVVFWGVGVYNRIVAMRNYFRNAFSQIDVQLKRRYDLIPNLVETAKA 59

Query: 60  YASHEKDTLEAVTRAR-AAATSFQITPEVLNDPKAFAKFQEVQGQLSSALSRLMAVSENY 118
           Y +HE++TLEAV  AR  A  + +       D  AF +     G L+++L +L A+SE Y
Sbjct: 60  YMAHERETLEAVIGARNQAVNANKKAAGDPADAAAFRQMVAADGVLNASLGKLFALSEAY 119

Query: 119 PQLKADTSFRDLQSQLEGTENRITVARQRYIAAVKDYNILARSFPTNITA 168
           P LKA+ +   L  +L  TENRI  ARQ Y  +V  YN     FP ++ A
Sbjct: 120 PDLKANQTMMQLSEELTSTENRIAFARQGYNDSVMSYNTAIEQFPGSLIA 169


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.127    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 291,958
Number of extensions: 9100
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 2
Length of query: 197
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 120
Effective length of database: 746,632
Effective search space: 89595840
Effective search space used: 89595840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)