BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3330.p
         (272 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093889|ref|YP_001098964.1| orotidine 5'-phosphate decarbox...   436   e-124

>gi|134093889|ref|YP_001098964.1| orotidine 5'-phosphate
           decarboxylase [Herminiimonas arsenicoxydans]
          Length = 271

 Score =  436 bits (1122), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/271 (80%), Positives = 247/271 (91%), Gaps = 2/271 (0%)

Query: 1   VTFIEKLNAAWTSRNSLLCVGLDPDLKKFPAELQGKPDAIFEFCRAIIDATADAACAFKP 60
           +TFI+KL+AAW ++NS LC+GLDPD  KFPA LQGKPDAI +FC+AIIDATADAAC+FKP
Sbjct: 1   MTFIDKLSAAWQTQNSQLCIGLDPDPAKFPAHLQGKPDAILDFCKAIIDATADAACSFKP 60

Query: 61  QIAYFAALGAEEQLERICAYLRSQYPDIPLVLDAKRGDIGATAEQYAREAFERYDADVVT 120
           QIAYFAAL AE+QLE IC YLR +YP IP+VLDAKRGDIGATAEQYAREAFERY AD VT
Sbjct: 61  QIAYFAALRAEDQLEEICKYLRERYPHIPVVLDAKRGDIGATAEQYAREAFERYGADAVT 120

Query: 121 VSPYMGWDSVSPYLEWKDRGVIVLCRTSNAGGSDLQFLEVDGKPLYQHVARLVAEKWNTN 180
           V+PYMG+DSV PYLE +D+GVIVLCRTSNAGGSDLQFL+V G+PLYQHVA LVA+KWNTN
Sbjct: 121 VNPYMGFDSVQPYLERQDKGVIVLCRTSNAGGSDLQFLDVGGQPLYQHVAHLVADKWNTN 180

Query: 181 GQCGLVVGATFPQELAQVRAIIGDMPLLVPGVGAQGGDVQATVNAGKTASGTGMMINSSR 240
           GQC LVVGATFP ELAQVRAI+GDMPLL+PG+GAQGGD++ATV AG+TA+GTGMMINSSR
Sbjct: 181 GQCALVVGATFPNELAQVRAIVGDMPLLIPGIGAQGGDIKATVEAGRTANGTGMMINSSR 240

Query: 241 AILYAKPEAGEDFAAAARRVAIETRDAINRF 271
           AILYAKP+  E FA AAR+VA+ETRDAINRF
Sbjct: 241 AILYAKPD--EMFAQAARQVALETRDAINRF 269


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 525,533
Number of extensions: 21558
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 192
Effective length of database: 736,747
Effective search space: 141455424
Effective search space used: 141455424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)