BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3327.p
         (321 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093892|ref|YP_001098967.1| thiamin-monophosphate kinase [H...   420   e-119

>gi|134093892|ref|YP_001098967.1| thiamin-monophosphate kinase
           [Herminiimonas arsenicoxydans]
          Length = 319

 Score =  420 bits (1080), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/318 (66%), Positives = 246/318 (77%)

Query: 2   LSEFELIARYFSRPPAPDSRTALGVGDDCALMTPAPGMQLAISSDMLVEGRHFFPDADPH 61
           +SEF+LIARYF R   P +R  LG+GDDCAL+      Q AIS+DMLVEGRHFF  ADP+
Sbjct: 1   MSEFDLIARYFVRHAHPKNRATLGIGDDCALLMQEADTQTAISTDMLVEGRHFFVGADPY 60

Query: 62  TLGHKCLAVNLSDLAAMGAQPIAFTLALALPQARAEWLAPFSQGMLALADQHGCELIGGD 121
            LGHK LAVNLSDLAAMGA+P AFTLA ALP+A  +WL  FS G+ ALAD H CELIGGD
Sbjct: 61  KLGHKALAVNLSDLAAMGAEPQAFTLAFALPRADEQWLEQFSAGLFALADMHNCELIGGD 120

Query: 122 TTKGPLTISITVFGEVPPQQALRRDAARAGDDIWVSGTLGDARLALAGYRQEFEVHPEQL 181
           TTKGPL I IT+FG  P  QALRRD A+ GDDIWVSGTLGDARLAL   R+E+ ++   L
Sbjct: 121 TTKGPLNICITIFGHTPVGQALRRDTAQIGDDIWVSGTLGDARLALGALREEYPLNAAAL 180

Query: 182 QQAAPRMHAPTPRVALGLALRGIAHAAIDISDGLAGDLGHILARSRVGATLDVDALPSGA 241
           + A  R+H P P+VALGLALRGIAH+A+D+SDGL GDLGHIL +S VGATL VDALP G 
Sbjct: 181 EAACVRLHTPQPQVALGLALRGIAHSALDVSDGLIGDLGHILKKSAVGATLQVDALPLGT 240

Query: 242 ALQQRDLHLRRRFTLSGGDDYELCFTAPARQREAVQKAAHAAGTAVTRIGRIDAQTGLRL 301
           ALQQ+ L +RRRF+L+GGDDYELCFTAPA +R+AV  AA +A T+VTRIG I+A  G RL
Sbjct: 241 ALQQQTLEMRRRFSLAGGDDYELCFTAPASKRDAVLGAALSAATSVTRIGVIEAAPGTRL 300

Query: 302 LDAAGEPLQETPDSFDHF 319
           +D  G+PL     SFDHF
Sbjct: 301 IDGDGKPLALQLASFDHF 318


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 653,261
Number of extensions: 26777
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 239
Effective length of database: 730,157
Effective search space: 174507523
Effective search space used: 174507523
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)