BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3326.p
         (767 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093897|ref|YP_001098972.1| malic enzyme [Herminiimonas ars...  1252   0.0  

>gi|134093897|ref|YP_001098972.1| malic enzyme [Herminiimonas
           arsenicoxydans]
          Length = 770

 Score = 1252 bits (3239), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 612/766 (79%), Positives = 689/766 (89%)

Query: 2   ISKKEEVRQQLRQAALDYHEFPTPGKIAVTPTKLLTNQRDLSLAYSPGVAAACEEIVADP 61
           I KKEE+R QLRQAAL+YHEFPTPGKI+VTPTK +TNQRDL+LAY+PGVA ACEEI A+P
Sbjct: 5   IDKKEELRLQLRQAALEYHEFPTPGKISVTPTKQVTNQRDLALAYTPGVAVACEEIAANP 64

Query: 62  LNAFRYTARGNLVAVISNGTAVLGLGNIGALASKPVMEGKGVLFKKFAGIDVFDIEVNET 121
            +++RYT+RGNLVAVI+NGTAVLGLGNIG LA+KPVMEGKGVLFKKFAGIDVFDIE+NET
Sbjct: 65  ADSYRYTSRGNLVAVITNGTAVLGLGNIGPLAAKPVMEGKGVLFKKFAGIDVFDIEINET 124

Query: 122 DPDKLIDVIAALEPTFGGINLEDIKAPECFYIERKLREKMKIPVFHDDQHGTAIIVGAAI 181
           DPDKL D+IA+LEPTFGGINLEDIKAPECFYIER LRE+MKIPVFHDDQHGTAIIV AAI
Sbjct: 125 DPDKLCDIIASLEPTFGGINLEDIKAPECFYIERTLRERMKIPVFHDDQHGTAIIVAAAI 184

Query: 182 LNGLKVVGKDIKNVKLVVSGAGAAALACLDLIVDLGFPIENIFVTDLAGVVYKGRKELMD 241
           LNGLKVVGK I+N KLVVSGAGAAALACLDL+VDLGFP+ENIFVTDLAGVVY GR ELMD
Sbjct: 185 LNGLKVVGKTIQNTKLVVSGAGAAALACLDLLVDLGFPLENIFVTDLAGVVYHGRVELMD 244

Query: 242 PDKERFARETDARTLAEVIPDADIFLGLSAAGVLKPEMVKQMAARPLVLALANPTPEILP 301
           P KERFA++TDAR LA+VI  AD+FLG+S  GVLKP+MV  MA RPL+LALANPTPEILP
Sbjct: 245 PAKERFAQKTDARKLADVIGGADVFLGVSGGGVLKPDMVAAMADRPLILALANPTPEILP 304

Query: 302 EEVMAVRDDAIIATGRSDYPNQVNNVLCFPYIFRGALDSGATTITREMEIATVHAIAELA 361
           EEV AVR DA+IATGRSDYPNQVNNVLCFPYIFRGALD GATTITREMEIA VHAIA+LA
Sbjct: 305 EEVRAVRSDAVIATGRSDYPNQVNNVLCFPYIFRGALDCGATTITREMEIAAVHAIAQLA 364

Query: 362 QAEQSDIVASTYGIANLSFGPEYIIPKPFDPRLMIKIAPAVARAAQSSGVAARPIQDMDA 421
           QAEQSDIVA+TYGI NLSFGP+YIIP PFDPRLMIKIA AVA+AA+  GVAARPI+DM+A
Sbjct: 365 QAEQSDIVATTYGINNLSFGPDYIIPMPFDPRLMIKIAMAVAKAAEECGVAARPIKDMEA 424

Query: 422 YIEKLEQFVYHSGTFMRPIFQVAKKAAEAQKRIVYAEGEEERVLRAVQVVVDENLAKPIL 481
           Y +KL+QFVY SGTFM+PIFQ+AK      KRIVYAE EEERVLRAVQVVVDE LA+PIL
Sbjct: 425 YADKLQQFVYRSGTFMKPIFQIAKSTPSDLKRIVYAEAEEERVLRAVQVVVDEKLARPIL 484

Query: 482 VGRPEVLEQRIQKFGLRLRAGVDFEVINPNFDSRYRDYWQTFLEMSRRKGVTEQYAKLEM 541
           +GRP VL QRI++FGLR++  +DF +INP  D RYRD+WQT+L M+ RKGVTEQYAKLEM
Sbjct: 485 IGRPAVLLQRIERFGLRIKPDIDFTIINPEHDDRYRDFWQTYLAMTLRKGVTEQYAKLEM 544

Query: 542 RRRHTLIGSMAIHKGDADGLICGTYGTTQLHLHYIDQVLGKRAGVNVYAAMNAVILPNRQ 601
           RRRHTLIG+MAIHK  ADG+ICGT+GTT LHL Y++QVLGKRAGVN YAAMN VI+ +RQ
Sbjct: 545 RRRHTLIGAMAIHKKYADGMICGTFGTTDLHLKYVEQVLGKRAGVNSYAAMNCVIMSDRQ 604

Query: 602 LVMVDTHVNENPNARELAEITMLAAEEMRRFGLHPRAALLSHSNFGSSNNESARKMREAL 661
           L +VDTHVNENP+A +LAEIT+LAAEEMRRFG+ PRAALLSHSNFGSSN+ESA+KMR+ L
Sbjct: 605 LFLVDTHVNENPSAEQLAEITILAAEEMRRFGMPPRAALLSHSNFGSSNSESAQKMRKVL 664

Query: 662 AILREIAPELEVDGEMHGDTALDSKLLNAVIPDSPLKGDANLLVMPNIDAANIAYNLLKT 721
            ++RE AP+LE+DGEMHGD A+++  L   +PDS LKGDANLLV PNID+ANIAYNLLKT
Sbjct: 665 QLVRERAPDLEIDGEMHGDLAMNAVELKKAMPDSALKGDANLLVFPNIDSANIAYNLLKT 724

Query: 722 ASGNGVAIGPILLGCAKPVHILTPSATVRRIINMTALCVMDAISER 767
             GNGVAIGPILLGC KPVHILTPSATVRRI+NMTALCV DA++ER
Sbjct: 725 TVGNGVAIGPILLGCDKPVHILTPSATVRRIVNMTALCVADAVAER 770


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,419,826
Number of extensions: 59665
Number of successful extensions: 207
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 1
Length of query: 767
Length of database: 1,000,347
Length adjustment: 89
Effective length of query: 678
Effective length of database: 707,092
Effective search space: 479408376
Effective search space used: 479408376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)