BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3324.p (602 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093686|ref|YP_001098761.1| putative C4-dicarboxylate senso... 128 8e-31 gi|134096599|ref|YP_001101674.1| putative sensor histidine kinas... 100 3e-22 gi|134093420|ref|YP_001098495.1| putative two-component sensor k... 82 6e-17 gi|134094132|ref|YP_001099207.1| putative two-component system s... 74 2e-14 gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two... 66 4e-12 >gi|134093686|ref|YP_001098761.1| putative C4-dicarboxylate sensor protein dctS [Herminiimonas arsenicoxydans] Length = 599 Score = 128 bits (322), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 88/255 (34%), Positives = 142/255 (55%), Gaps = 15/255 (5%) Query: 357 QQTESLLRTTQNELVQAGKLAMLGQMAAGVTHELNQPLAAIRAFADNSLKFLARGQTVQV 416 ++ E L R Q +L + +LA +G++A+ + HELNQPLAAI ++ +L LA Q + Sbjct: 335 KRVEDLNRQQQEKLQASARLATMGEIASTLAHELNQPLAAISSYTTGALNLLASEQPKEA 394 Query: 417 AENLEHISHA-------SARMGKIIGQLKGFARKSGEAVAAVDLRQSIEASVLLLSSDFQ 469 N+E ++ A + R G+II + F +K A+ + + I + L+ Q Sbjct: 395 TINIEMLTQALEKANAQAQRAGQIIRSVHTFVKKREPMRTAISISELIGSVTPLVELQAQ 454 Query: 470 KQDVQVRIEGEPAVL--VMGDAVRTEQVLINLLRNALDAVEE-APRKCICVLLQA-DPLR 525 + V ++++ PA L V+ D V EQVL+NL RN +++++ AP K I + A DP Sbjct: 455 QYFVTIKVD-IPAALPAVLADQVLLEQVLLNLTRNGIESMQSVAPEKRILRIAAAIDPAT 513 Query: 526 -QQALVSIRDSGPGIADEVAPHLFEPFFTTKSSSKGLGLGLAISSSIVQAMNGQLSAHNH 584 + +VSI D G GIA EVA L+ PFF+TK + G+G+GL+I + ++ G L+ ++ Sbjct: 514 PRNVVVSISDQGHGIASEVAERLYSPFFSTK--ADGMGMGLSICRTAIEFHGGTLTHVDN 571 Query: 585 EQGGAEFVVRLPLLK 599 GG F LP L+ Sbjct: 572 RGGGTIFRFSLPALQ 586 >gi|134096599|ref|YP_001101674.1| putative sensor histidine kinase [Herminiimonas arsenicoxydans] Length = 678 Score = 99.8 bits (247), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 86/292 (29%), Positives = 141/292 (48%), Gaps = 22/292 (7%) Query: 309 QHRRRLQERLASRDA-LRRAAQELDQKIAQRTEELTAANQAIAAKYAKLQQTESLLRTTQ 367 H L + + ++A L+ +LD+K+ +RT EL ++T LL Q Sbjct: 402 HHLDELLDTVQKQNAELKAWGDQLDRKVIERTIEL--------------EKTNKLLVKAQ 447 Query: 368 NELVQAGKLAMLGQMAAGVTHELNQPLAAIRAFADNSLKFLARGQTVQVAENLEHISHAS 427 +LV A KLA +G++ AGV HE+N P+A ++ D L T V L + Sbjct: 448 QQLVLAEKLAAIGEITAGVAHEINNPVAVLQGNLDVLRDTLGAAAT-PVQGELRLMDQQI 506 Query: 428 ARMGKIIGQLKGFARKSGE---AVAAVDLRQSIEASVLLLSSDFQKQDVQVRIEGEPAVL 484 R+ I+ +L FA GE V A+ + + + +++L+ + +++V + Sbjct: 507 HRINTIVTKLLQFA-SPGEFAGYVEAIAVDEVVVDTLVLVRHLLNQSNIEVVHNRHATLA 565 Query: 485 VMGDAVRTEQVLINLLRNALDAVEEAPRKCICVLLQADPLRQQAL-VSIRDSGPGIADEV 543 V + +QVLINL NA+ A++ R I D + + +++ D+G GI E Sbjct: 566 VHINRGELQQVLINLFTNAVHAMKNGGRLTIESRDWIDDAGARGVTINVIDTGAGIKKED 625 Query: 544 APHLFEPFFTTKSSSKGLGLGLAISSSIVQAMNGQLSAHNHEQGGAEFVVRL 595 +F+ FFTTK G GLGL+IS ++V G ++ + E G EF VRL Sbjct: 626 QARIFDAFFTTKRQG-GTGLGLSISYTLVARYGGTITVKSEEGVGTEFTVRL 676 >gi|134093420|ref|YP_001098495.1| putative two-component sensor kinase [Herminiimonas arsenicoxydans] Length = 767 Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 123/245 (50%), Gaps = 21/245 (8%) Query: 368 NELVQAGKLAMLGQMAAGVTHELNQPLAAIRAFADNSLKFLARGQTVQVAENLEH----I 423 ++++ A + G++A + HE+ PL I+ A+ L Q A LE I Sbjct: 522 SDVISAQRSIAWGEVARRLAHEIKNPLTPIQLSAERLQMKLEGKLNEQDARILERSTATI 581 Query: 424 SHASARMGKIIGQLKGFARKSGEAVAAVDLRQSIEASVLLLSSDFQKQDVQVRI-EGEPA 482 + + M +++ + +A+ ++ +DL IE + L + ++ + R+ EG P Sbjct: 582 VNQVSAMQRMVDDFRDYAKTPPAVLSPLDLNALIEEILHLYQTGDERDIIHARLAEGLP- 640 Query: 483 VLVMGDAVRTEQVLINLLRNALDAVEEAPRKC----ICVLLQ------ADPLRQQAL-VS 531 LVMGDA + QV+ NLL+NA DAV + R+ I ++ + +D A+ +S Sbjct: 641 -LVMGDATQLRQVIHNLLQNAQDAVADQIRQESTARIDIITEEIHYRSSDGTVSNAVQLS 699 Query: 532 IRDSGPGIADEVAPHLFEPFFTTKSSSKGLGLGLAISSSIVQAMNGQLSAHNH-EQGGAE 590 I D+GPG + ++ H FEP+ T+K +G GLGLA+ I++ G++ N GA+ Sbjct: 700 ITDTGPGFSPKILAHAFEPYITSK--PRGTGLGLAMVKKIIEEHGGRIDIKNRTSTNGAK 757 Query: 591 FVVRL 595 + L Sbjct: 758 VAILL 762 >gi|134094132|ref|YP_001099207.1| putative two-component system sensory histidine kinase [Herminiimonas arsenicoxydans] Length = 1544 Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 141/291 (48%), Gaps = 30/291 (10%) Query: 329 QELDQKIAQRTEELTAANQAIAAKYAKLQQTESLLRTTQNELVQAGKLAMLGQMAAGVTH 388 +L+QKI RT QA++ K A+L T + LR TQ +LV++ KLA LGQ+ AGV H Sbjct: 1244 NDLEQKIEART-------QALSQKNAELHTTLNSLRQTQKQLVESAKLASLGQLVAGVAH 1296 Query: 389 ELNQPL------AAIRAFADNSLKFLARGQTVQVAENLEHISHASA----------RMGK 432 E+N P+ A+ A LK L + ++ ++ ++ A+ R Sbjct: 1297 EINTPVGVSMTSASTLAEETTRLKTLFQSGEMKRSDLDTYVGTAATISKLLLSNMERAAT 1356 Query: 433 IIGQLKGFA-RKSGEAVAAVDLRQSIEASVLLLSSDFQKQDVQVRIEGEPAVLVMGDAVR 491 +I K A ++ E L+ I+ + LS ++ + ++ ++ E + + Sbjct: 1357 LIQSFKDVAVDQASEERRIFRLKMYIDEVLSNLSPMLRRSEHRMTVDCEETLEIDTYPGA 1416 Query: 492 TEQVLINLLRNA-LDAVEEAPRKCICVLLQADPLR--QQALVSIR--DSGPGIADEVAPH 546 Q++ N + NA L A + + ++++ + + L+ +R D+G GI + Sbjct: 1417 LAQIITNFVMNALLHAFPDDVSGEMLIVVRNVYAKGMETDLIELRFSDNGIGIPQKNLTK 1476 Query: 547 LFEPFFTTKSSSKGLGLGLAISSSIVQ-AMNGQLSAHNHEQGGAEFVVRLP 596 +F+PFFTT S G GLGL I ++V ++ GQ+S + G F+VR P Sbjct: 1477 IFDPFFTTMRGSGGSGLGLNIIHNLVTGSLQGQISVESQMGDGTTFIVRFP 1527 >gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation [Herminiimonas arsenicoxydans] Length = 921 Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/241 (26%), Positives = 110/241 (45%), Gaps = 12/241 (4%) Query: 363 LRTTQNELVQAGKLAMLGQMAAGVTHELNQPLAAIRAFADNSLKFLARGQTVQVAENLEH 422 + Q+ LV+ + + + ++H+L PL ++ ++ SL T E + Sbjct: 669 IEVAQDALVRMESERLRNSLLSALSHDLRTPLTSLVGLSE-SLTMSKPPLTSSQQELAQA 727 Query: 423 ISHASARMGKIIGQLKGFAR-KSGEA---VAAVDLRQSIEASVLLLSSDFQKQDVQVRIE 478 + + RM ++ L AR +SGE + + + + +++ S +++ R+ Sbjct: 728 LHDEARRMSNLVSNLLDMARIQSGEVKFNLQWLQFEEVVGSALRASQSAIAHHEIKTRLA 787 Query: 479 GEPAVLVMGDAVRTEQVLINLLRNALDAVEEAPRKCICVLLQADPLRQQALVSIRDSGPG 538 + LV DAV E+VL NL+ NA R I + L VS+ D+GPG Sbjct: 788 PD-LPLVRFDAVLIERVLCNLIENAAKYTPAGSRIVIAAEISGRFLE----VSVYDNGPG 842 Query: 539 IADEVAPHLFEPFF--TTKSSSKGLGLGLAISSSIVQAMNGQLSAHNHEQGGAEFVVRLP 596 + +F+ F +S++ G+GLGLAI +IV+A G + A + GGA LP Sbjct: 843 LPAGQEEAIFDKFTRGERESATPGVGLGLAICRAIVEAHQGTIRAAHSPDGGASINFTLP 902 Query: 597 L 597 L Sbjct: 903 L 903 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.133 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 926,817 Number of extensions: 35481 Number of successful extensions: 214 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 187 Number of HSP's successfully gapped: 17 Length of query: 602 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 515 Effective length of database: 713,682 Effective search space: 367546230 Effective search space used: 367546230 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)