BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3323.p (445 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094186|ref|YP_001099261.1| two-component system response r... 267 1e-72 gi|134096598|ref|YP_001101673.1| two-component regulatory system... 265 4e-72 gi|134095935|ref|YP_001101010.1| type 4 fimbriae expression regu... 234 8e-63 gi|134093746|ref|YP_001098821.1| AoxR regulatory protein [Hermin... 220 1e-58 gi|134093917|ref|YP_001098992.1| putative sigma-54 dependent tra... 211 8e-56 >gi|134094186|ref|YP_001099261.1| two-component system response regulator [Herminiimonas arsenicoxydans] Length = 473 Score = 267 bits (682), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 144/325 (44%), Positives = 205/325 (63%), Gaps = 8/325 (2%) Query: 52 PGVLVTDVRLPGWSGLQVLAHVVAIDADLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFG 111 P VLV+D+R+PG +GL++L V A LPVI++T D+ AV A + GA++++ KPF Sbjct: 9 PQVLVSDIRMPGETGLELLQAVKAKHPGLPVIIITAFSDLDSAVAAFQGGAFEYLAKPFD 68 Query: 112 SDSLLEIALRAQEKRSLVLENRRLREAWAQDPELPPLVGQSPAIERVRTLIRSLGPADVD 171 D +E+ RA E+ L + + A+ PE+ +GQ+PA++ V I L ++V Sbjct: 69 IDKAVELIRRALEES---LRETSIEQVSAETPEI---LGQAPAMQDVFRAIGRLSQSNVT 122 Query: 172 VLINGQTGSGKEVVARQLHAASGRKG-PFVALNCGALPETVFESEIFGHEAGAFTGAQKR 230 VLI G++GSGKE+VAR LH S R PF+ALN A+P+ + ESE+FGHE GAFTGAQ Sbjct: 123 VLITGESGSGKELVARALHKHSPRASQPFIALNTAAIPKDLLESELFGHERGAFTGAQAS 182 Query: 231 RIGKLEYAHGGTLFLDEIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKVD 290 R G+ E A GGTLFLDEI MP LQ +LLRVL + R+GG++ + + RV+AA+ + Sbjct: 183 RRGRFEQADGGTLFLDEIGDMPFDLQTRLLRVLSDGHFYRVGGHQPLKANVRVIAATHQN 242 Query: 291 LLKLAGQGQFREDLYYRIGVVAIDLPALHQRSSDIPLLLAHFCQAAAVRYRREVPPWTAA 350 L + +G FREDLY+R+ V+ + LP+L +R DIP+L HF +A + EV + Sbjct: 243 LEQRVREGLFREDLYHRLNVIRLRLPSLRERREDIPILTRHFLAQSAKQLGVEVKRMSDG 302 Query: 351 QMQQWQQREWPGNVRELRNFADRWV 375 MQ E PGNVR+L N + W+ Sbjct: 303 AMQFLTNLELPGNVRQLENLCN-WI 326 >gi|134096598|ref|YP_001101673.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 474 Score = 265 bits (677), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 164/439 (37%), Positives = 245/439 (55%), Gaps = 11/439 (2%) Query: 9 SAILIEDEQAVRRATAQALELEGFTVTACASAEEALPLLTRDFPGVLVTDVRLPGWSGLQ 68 S ++++DE +R + LE V A S E A LL +++ D LPG SG++ Sbjct: 38 SILIVDDEPGMRSFLQRTLEDRCSRVEAVDSVEAASVLLDSRHFDLIILDNSLPGKSGVE 97 Query: 69 VLAHVVAIDADLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFGSDSLLEIALRAQEKRSL 128 L + A+ V+++T D+ A+ A+RAGA DF+ KPF + +L R ++ L Sbjct: 98 WLHEMRALGLHNDVVLITAFADLETAIHALRAGAADFLLKPFRVNQILSAIGRCFDRTHL 157 Query: 129 VLENRRLREAWAQ--DPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGSGKEVVA 186 EN LR D + LVG S A++ VR I+ L VLI G++G+GKE+ A Sbjct: 158 RRENFILRRELDSHVDFGVDGLVGNSTALQPVRETIKRLATVSSTVLITGESGTGKEIAA 217 Query: 187 RQLHAASGRKGP-FVALNCGALPETVFESEIFGHEAGAFTGAQKRRIGKLEYAHGGTLFL 245 R +H S R G FV +NCGA+ + ESE+FGH GAF+GA R G YA GGTLFL Sbjct: 218 RAMHYLSSRSGNHFVPVNCGAVAPDIIESELFGHVKGAFSGAASSREGLFFYAQGGTLFL 277 Query: 246 DEIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKVDLLKLAGQGQFREDLY 305 DE+ +P+A+QVKLLRVL+E+++ +G + +D RV+AA+ ++ + +G+FR+DLY Sbjct: 278 DEVAELPMAMQVKLLRVLEEKKIRPVGAEREIPVDVRVIAATNRNVEEAVQEGRFRQDLY 337 Query: 306 YRIGVVAIDLPALHQRSSDIPLLLAHFCQAAAVRYRREVPPW--TAAQMQQWQQREWPGN 363 YR+ VV + +P L +R+ DIP L A+F + A + VPP A + WPGN Sbjct: 338 YRLNVVQVHMPPLRERADDIPALAAYFVRQLAPQL--GVPPQQPDNALLAAMVSHAWPGN 395 Query: 364 VRELRNFADRWVL--GVEQMAGTGLPVGAQPALPLPEQVEQFEAGLIAAALKDSEGSVAL 421 VRELRN +RW++ + ++A V + ++ E I L ++G+ Sbjct: 396 VRELRNLIERWLILGNIPEIAIGSKSVAIDNGSDV--SLQAIEKQHILKILGAADGNKTE 453 Query: 422 AAERLGIPRKTLYDKIRKY 440 AA RLG+ RKTL K ++ Sbjct: 454 AARRLGLSRKTLERKCAEW 472 >gi|134095935|ref|YP_001101010.1| type 4 fimbriae expression regulatory protein [Herminiimonas arsenicoxydans] Length = 475 Score = 234 bits (596), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 140/369 (37%), Positives = 213/369 (57%), Gaps = 8/369 (2%) Query: 7 APSAILIEDEQAVRRATAQALELEGFTVTACASAEEALPLLTRDFPGVLVTDVRLPGWSG 66 +P ++++DE +R L G + + A+ E A L + +++TD+RLP G Sbjct: 3 SPRILVVDDEADLRELLEITLIKMGLDIDSAATLEAARDYLAKTEYALVLTDMRLPDGLG 62 Query: 67 LQVLAHVVAIDADLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFGSDSLLEIALRAQEKR 126 ++++ V A + P+ V+T G AV A++AGA+D++ KP G + L + A Sbjct: 63 IELVQEVTAQYKNTPIAVITAFGSADNAVIALKAGAFDYLSKPVGLEQLRVMVRSALRIS 122 Query: 127 SLVLENRRLREAWAQDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGSGKEVVA 186 V+ ++ ++A A P L+GQS A++ +R I L + V I+G++GSGKE+ A Sbjct: 123 QGVVSDKVNQKAIA--PTALRLMGQSDAMQALRAQIARLARSMAPVAISGESGSGKELAA 180 Query: 187 RQLHAASGRKG-PFVALNCGALPETVFESEIFGHEAGAFTGAQKRRIGKLEYAHGGTLFL 245 R +HA S R PFVA+NCGA+PE + E+E FG+ GAFTGA R G + A+GGTL L Sbjct: 181 RDIHAQSARNDKPFVAVNCGAIPEALMEAEFFGYRKGAFTGAADDRDGFFQAANGGTLLL 240 Query: 246 DEIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKVDLLKLAGQGQFREDLY 305 DE+ +PLA+QVKLLR +QER + ++G +D R+++A+ +L G+G FR+DLY Sbjct: 241 DEVADLPLAMQVKLLRAIQERCVRKVGATVEEPVDVRIISATHQNLHDCVGKGTFRQDLY 300 Query: 306 YRIGVVAIDLPALHQRSSDIPLLLAHFCQAAAVRY-RREVPPWTAAQMQQWQQREWPGNV 364 YR+ V+ + LP L +R DI LL QA VR E + A + +PGNV Sbjct: 301 YRLNVIELHLPPLRERLDDIGLL----AQAILVRLGGGEQAALSPAALAALCSYSFPGNV 356 Query: 365 RELRNFADR 373 REL N +R Sbjct: 357 RELENILER 365 >gi|134093746|ref|YP_001098821.1| AoxR regulatory protein [Herminiimonas arsenicoxydans] Length = 454 Score = 220 bits (560), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 154/465 (33%), Positives = 232/465 (49%), Gaps = 45/465 (9%) Query: 9 SAILIEDEQAVRRATAQALELEGFTVTACASAEEALPLLTRDFPGVLVTDVRLPGWSGLQ 68 S +L+ED+ + + +E SA AL + + LV+D+RLP SG Sbjct: 3 SVLLVEDDAIMGESICDRFAIEKIDHEWVQSATAALSRMKQRKFDCLVSDIRLPDLSGEM 62 Query: 69 VLAH-VVAIDADLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFGSDSLL-EIALRAQEKR 126 + + + D P I +TG+G A + GA D++ KP +S++ +I L Sbjct: 63 MFERGKESGNLDYPAIFITGYGTQQQAERLLAKGAADYLVKPLDLESMIGKIRLLTAGSS 122 Query: 127 SLVLENRRLREAWAQDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGSGKEVVA 186 ++ ++ P +G S I+R+ ++ +G VL+ G++GSGKE +A Sbjct: 123 PIITASK-------------PTLGISREIQRLEEMVVKMGEQWTSVLVTGESGSGKEELA 169 Query: 187 RQLH-AASGRKGPFVALNCGALPETVFESEIFGHEAGAFTGAQKRRIGKLEYAHGGTLFL 245 R LH +A PF+A+NCGALPE + E+E+FG+E GAFTGA K G E A+ GT+FL Sbjct: 170 RLLHRSAQAGNNPFIAVNCGALPEGMMEAELFGYERGAFTGAAKSHRGYFEQANNGTVFL 229 Query: 246 DEIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKVDLLKLAGQGQFREDLY 305 DEI + A QV+LLRVLQE L RLG + + ++ R++AA+ D+ + G+FREDLY Sbjct: 230 DEIGELAPAAQVRLLRVLQEHTLTRLGSEKPIKVNFRLIAATHRDVREEVKAGRFREDLY 289 Query: 306 YRIGVVAIDLPALHQRSSDIP----LLLAHFCQAAAVRYRREVPPWTAAQMQQWQQREWP 361 YRI ++ + +P L +R D+ L L + QA R P + W Sbjct: 290 YRINIIQLRVPPLRERLDDVAWLARLFLEQWNQAHPTSPRMLSEP----TITFLCTLPWR 345 Query: 362 GNVRELRNFADRWVLGV---------------EQMAGTGLPVGAQPAL------PLPEQV 400 GN+REL++ +R L E+ GT P PA+ PL E Sbjct: 346 GNIRELKHAIERACLLTAHPLLRPDDFEMQISEEKLGTFHPATEVPAMAQPHIIPLAEFN 405 Query: 401 EQFEAGLIAAALKDSEGSVALAAERLGIPRKTLYDKIRKYQLAGT 445 + E + L G +A A LGI RKTL++K RK + G+ Sbjct: 406 REQERRYLVQVLAHYSGQMAQTAAALGISRKTLWEKTRKLGIKGS 450 >gi|134093917|ref|YP_001098992.1| putative sigma-54 dependent transcriptional regulator [Herminiimonas arsenicoxydans] Length = 550 Score = 211 bits (536), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 127/333 (38%), Positives = 191/333 (57%), Gaps = 22/333 (6%) Query: 121 RAQEK-RSLVLENRRLREAWAQDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTG 179 RAQEK +E +LR +P + L+ +SP ++++ L + + VLI G++G Sbjct: 223 RAQEKLHRFEMEVSQLRMG---NPAIAGLITRSPIMQQITVLAQKVAKVGATVLITGESG 279 Query: 180 SGKEVVARQLHAASGR-KGPFVALNCGALPETVFESEIFGHEAGAFTGAQKR-RIGKLEY 237 GKEV+ R +H S KGPFV +NCGA+P + ESE+FG+E GAFTGAQ++ ++G +E Sbjct: 280 VGKEVLTRLIHKESTHDKGPFVKINCGAIPRDLLESELFGYEGGAFTGAQRQGKVGMIEV 339 Query: 238 AHGGTLFLDEIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKVDLLKLAGQ 297 A GTLFLDEI +PL LQVKLL+VLQ+R L RLG + +D RVVAA+ DL + Sbjct: 340 ADKGTLFLDEIGELPLDLQVKLLQVLQDRTLTRLGSTRPIQVDVRVVAATNRDLQAMVDA 399 Query: 298 GQFREDLYYRIGVVAIDLPALHQRSSDIPLLLAHFCQAAAVRY--RREVPPWTAAQMQQW 355 QFR DL+YR+ VV + +P L +R DI L+ HF +Y + + + A + + Sbjct: 400 RQFRSDLFYRLNVVPLHVPPLRERREDILPLIQHFLDELNAQYGFDKRLSEQSLAALLDY 459 Query: 356 QQREWPGNVRELRNFADRWVLGVEQ--MAGTGLPVGAQPA--------LPLPEQVEQFEA 405 +WPGN+RELRN +R V+ + + LP +P L + + FE Sbjct: 460 ---DWPGNIRELRNMVERLVVTAPESLIRSDSLPTPLRPVELQSDLAHLDIKVRSAHFER 516 Query: 406 GLIAAALKDSEGSVALAAERLGIPRKTLYDKIR 438 ++ A+ + GS AA+ L I + T+ +++ Sbjct: 517 KIVQEAV-ERYGSTRAAAKHLQISQSTVVRRLK 548 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 871,439 Number of extensions: 38149 Number of successful extensions: 227 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 212 Number of HSP's successfully gapped: 16 Length of query: 445 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 360 Effective length of database: 720,272 Effective search space: 259297920 Effective search space used: 259297920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)