BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3318.p
         (343 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096464|ref|YP_001101539.1| putative oxidoreductase [Hermin...   137   6e-34

>gi|134096464|ref|YP_001101539.1| putative oxidoreductase
           [Herminiimonas arsenicoxydans]
          Length = 277

 Score =  137 bits (346), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 151/305 (49%), Gaps = 49/305 (16%)

Query: 23  NGPLVSAIGLGCMGMSDFYARRDDAESLATIDRALELGINLLDTADMYGPYTNEELLGRA 82
           +G  V  +G G   M D  +RR  AE +AT+   L+ G+ L+DTA+MYG   +E+L+G A
Sbjct: 8   SGEAVPVLGQGTWYMGDHASRR--AEEIATLRLGLDFGMTLIDTAEMYGDGASEKLVGEA 65

Query: 83  IQGRRDKFFIATKFGIRRDPADPQARGVDGSPAYIRQAVEGSLRRLGVDTIDLYYQHRID 142
           I GRRD+ F+ +K      P++    G          A E SL+RLG D IDLY  H   
Sbjct: 66  IAGRRDEVFLVSKVL----PSNATRHGTIA-------ACERSLKRLGTDRIDLYLLH-WR 113

Query: 143 PATPIEATMGVLADLVRAGKIRYIGLSEASAATLE---RAHRVHPVTALQSEYSLWTRDP 199
             TP   T+     L  AGKIR+ G+S      +    RA     V   Q  Y+L  R  
Sbjct: 114 GRTPFAETIAAFEALQDAGKIRHWGVSNMDVDDMREIARASGGEAVAVNQVLYNLTRRGI 173

Query: 200 EAEVLATCRALGIGFVAYSPLGRGFLTGAIQRFEDLAEDDFRRTNPRFQGENFARNLRLV 259
           E ++L   +  G+  +AYSP+ +G LT +                               
Sbjct: 174 EYDLLPQAQQRGLPIMAYSPIEQGRLTES------------------------------- 202

Query: 260 DKVKEMAEHHGCTPSQLALAWVMAQDPHIVPIPGTKRRRYLEENAGAFNVKLSSEDLLAL 319
            +V+++A+ HG +P+Q+ALAWV+ Q P ++ IP      ++++N  A ++KL+++DL  L
Sbjct: 203 PEVQDIADRHGASPAQIALAWVLRQ-PGVIAIPKASTPAHVQQNRAALDIKLTAQDLAEL 261

Query: 320 EAIFP 324
           +  FP
Sbjct: 262 DDTFP 266


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 671,539
Number of extensions: 28385
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 2
Length of query: 343
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 261
Effective length of database: 730,157
Effective search space: 190570977
Effective search space used: 190570977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)