BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3317.p
         (148 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096450|ref|YP_001101525.1| copper exporting ATPase transcr...    53   7e-09

>gi|134096450|ref|YP_001101525.1| copper exporting ATPase
           transcriptional repressor [Herminiimonas arsenicoxydans]
          Length = 139

 Score = 52.8 bits (125), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 60/109 (55%), Gaps = 2/109 (1%)

Query: 5   LTIAQAAQATGLSVHTLRYYERIGLLDPVERRDNHHRRYTQEDLNWIAFLKKLKATGLPV 64
           + I +AA+A+G+S   +R+YE I L+ P  R    +R Y  +DL+ + F+K+ ++ G  +
Sbjct: 1   MNIGEAAKASGISAKMIRHYESIHLVAPGARSGAGYRTYNDKDLHALRFIKRARSLGFSL 60

Query: 65  RAMLRYAELRRQGNTVQSVRERKAMLQMHTLNVQQTLAELQDNLAVLQH 113
             +     L    +T ++  + KA+   H  ++++ +AEL +    L+H
Sbjct: 61  DQIRDLLSL--WNDTQRASADVKAIALTHVADLEKRIAELSEMRDTLKH 107


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.128    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 212,309
Number of extensions: 7054
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 74
Effective length of database: 756,517
Effective search space: 55982258
Effective search space used: 55982258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 124 (52.4 bits)