BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3315.p
         (299 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093858|ref|YP_001098933.1| class A beta-lactamase [Hermini...   249   1e-67

>gi|134093858|ref|YP_001098933.1| class A beta-lactamase
           [Herminiimonas arsenicoxydans]
          Length = 299

 Score =  249 bits (636), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 134/297 (45%), Positives = 183/297 (61%), Gaps = 10/297 (3%)

Query: 2   FKRRHFLTLAALTA--SGLIHRSWAAGPQQASHSVDAAAISARLARLEADIGGRLGVSLV 59
           F  R  L LAA+    +G+   ++A+        +  +AI    +RLEA   GRLG+S  
Sbjct: 4   FSSRRSLLLAAIATPFAGMAIPAFAS-----DQRISRSAIQQEFSRLEASARGRLGLSAF 58

Query: 60  DTVGARQWGYRADERFPMCSTFKWLAAAAVLRRVDEGREQLTRRIVYHQRDLMP--YSPT 117
           +T    +  YRA ERFP+CSTFK + AAA+L++    +  L +RI Y++ ++    Y+P 
Sbjct: 59  NTGNGMRVQYRAYERFPVCSTFKTIVAAAILQKSTTDKRLLNKRIRYNKDEVEQSGYAPI 118

Query: 118 TGKHVDGTGLSLAQLCEAAVTLSDNTAANLMLASMGGPAGMTAFVRTLGDALTRLDRNEP 177
           T KH+   G+S+A+LC A +  SDN AAN ++  +GGPA +TA+ RT+GD   RLDR EP
Sbjct: 119 TQKHI-ADGMSIAELCAATLQYSDNAAANFLMQELGGPAAVTAYARTIGDDTFRLDRWEP 177

Query: 178 TLNQAVPGDPRDTTTPAAMTADLQRLVLGDALTPTSRAQLTQWLLANQTGDKRVRAGLPA 237
            LN A+PGD RDT+TPAAM   +QRL LGDAL    R QL  WL  N TG KR++AG+P 
Sbjct: 178 ELNTAIPGDLRDTSTPAAMGKSVQRLTLGDALALPQREQLVNWLKGNTTGGKRMQAGVPQ 237

Query: 238 GWKVGDKTGTGRLGTANDVGVAWTPQGKPLLFAVYLTENAADDARRDALHAEVGRLI 294
            W VGDKTGTG  GT ND GV W   G P++ A+Y T+N  +   RD + A   R++
Sbjct: 238 DWIVGDKTGTGYYGTTNDAGVIWPATGAPIVAAIYFTQNEKEARPRDDIIASATRIV 294


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.132    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 593,549
Number of extensions: 25652
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 218
Effective length of database: 733,452
Effective search space: 159892536
Effective search space used: 159892536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)