BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3313.p
         (332 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094223|ref|YP_001099298.1| hypothetical protein HEAR0989 [...   399   e-112
gi|134095784|ref|YP_001100859.1| M48 family peptidase [Herminiim...    77   9e-16
gi|134094443|ref|YP_001099518.1| putative signal peptide [Hermin...    57   1e-09

>gi|134094223|ref|YP_001099298.1| hypothetical protein HEAR0989
           [Herminiimonas arsenicoxydans]
          Length = 327

 Score =  399 bits (1025), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/332 (60%), Positives = 244/332 (73%), Gaps = 5/332 (1%)

Query: 1   MTISATYYDGKSSRPHQVTLQVSNGVAQLRGEVERECPIAELRVSERFTRAARKVSFPDG 60
           M I A Y+DGK+SR ++VTL V  G+A + G+ ER C IAELRVSER    +RKV+FPD 
Sbjct: 1   MQIPALYFDGKTSRAYRVTLSVEGGMAVISGDAERSCAIAELRVSERVRNTSRKVTFPDD 60

Query: 61  AYLEVTDGPAFSALLQETGHRDSLVVRLQHSWRHALAACVALVAVVILSYLYLLPLAAQG 120
           AYLE+ D  AF  LL  TGH+DS+VVR Q SWR AL A  A V V+ L Y Y LPLAA+ 
Sbjct: 61  AYLEIHDTRAFDTLLAATGHQDSIVVRAQQSWRGALLAFAATVLVLALGYSYGLPLAAEA 120

Query: 121 IVAVLPVEVDRQVGRGTLEFLDSHVLSKSQLDGRRAAAITARFKALTAPMDDAPEYQIVF 180
           I   LP +V+R +  G LEFLD  +L+ SQL   R   I A FK L  P + AP YQ+VF
Sbjct: 121 IAKALPEKVERSISSGMLEFLDKRILAPSQLPLARQTEIAAHFKQLLPPREGAPNYQLVF 180

Query: 181 RKSRIGPNAFALPSGQIVVTDEIVNLLDDDDALMGVLAHELGHVHRRHLMRRLIQSSAIA 240
           RKS IGPNAFALPSGQI++TDE+V LLD+D+ +MGVLAHELGH+H RHLMRR++QSSAI 
Sbjct: 181 RKSNIGPNAFALPSGQIILTDELVKLLDNDEQIMGVLAHELGHLHERHLMRRIVQSSAIG 240

Query: 241 AAATVLFGDVSAVLANIPTVLLDLKYSRDIEREADDYAIAMFKANGLPRQKLALVFEKLE 300
           A ATV+FGDVSA++ANIPT++LD+KYSRD EREADDYAIAM KANG+   +LA  FEK++
Sbjct: 241 AVATVIFGDVSAIIANIPTLMLDMKYSRDAEREADDYAIAMMKANGISLSQLARGFEKMQ 300

Query: 301 QVGEDHKDGPALPYLSSHPANEERIAHILGTR 332
              ++    P+ PYLSSHP+  ERIAHI   R
Sbjct: 301 TQEQE----PS-PYLSSHPSTTERIAHIRDAR 327


>gi|134095784|ref|YP_001100859.1| M48 family peptidase
           [Herminiimonas arsenicoxydans]
          Length = 456

 Score = 77.4 bits (189), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 78/155 (50%), Gaps = 16/155 (10%)

Query: 188 NAFALPSGQIVVTDEIVNLLDDDDALMGVLAHELGHVHRRHLMRRL---IQSSAIAAAAT 244
           NAFALP G I V   +V    ++  L  V+AHE+GHV +RH+ R L    Q   I  AA 
Sbjct: 62  NAFALPGGFIGVHSALVLAAQNESELASVMAHEIGHVAQRHIARMLGKQKQDMLIPLAAM 121

Query: 245 VLFGDVSAVL---ANIPTVL--------LDLKYSRDIEREADDYAIAMFKANGLPRQKLA 293
           VL G ++A     A I  ++          L +SRD EREAD   + + +  G     + 
Sbjct: 122 VL-GALTATASPDAGIAMMMGGQGLAIQRQLNFSRDAEREADRVGLDIMREAGFETSGMI 180

Query: 294 LVFEKLEQVGEDHKDGPALPYLSSHPANEERIAHI 328
             F +L+Q   ++ D  A PYL SHP   ERIA I
Sbjct: 181 NFFGRLQQASRNYTDS-APPYLRSHPMTTERIADI 214


>gi|134094443|ref|YP_001099518.1| putative signal peptide
           [Herminiimonas arsenicoxydans]
          Length = 276

 Score = 57.0 bits (136), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 113/246 (45%), Gaps = 29/246 (11%)

Query: 96  LAACVALVAVVILSYLYLLPLAAQGIVAVLPVEVDRQVGR--GTL--EFLDSHVLSKSQL 151
           LAAC      V  +   L+ +  Q  +AV   E+D+  G+   TL  E    + L+++  
Sbjct: 22  LAAC----ETVQTTQSGLVGVDRQQRMAVSAQELDQAAGKQYATLIAEQKQKNALNRNAA 77

Query: 152 DGRRAAAITARFKALTAPM-DDAPEYQI---VFRKSRIGPNAFALPSGQIVV-TDEIVNL 206
              R  +I  +  A T+    DAP +Q    V     +  NA+ +P G+I V T  I  L
Sbjct: 78  QVTRVRSIANKLIAQTSVFRPDAPRWQWEVNVLTSPEV--NAWCMPGGKIAVYTGLIEKL 135

Query: 207 LDDDDALMGVLAHELGHVHRRHLMRR----LIQSSAIAAAATVL-FGDVSAVLANIPTV- 260
              DD L  V+ HE+ H  R H   R    ++  S I+  + +L  G +    A    + 
Sbjct: 136 QVTDDELAAVIGHEISHALREHARERASEQIVAGSVISIGSALLGVGSLGQKGAEYTYMG 195

Query: 261 LLDLKYSRDIEREADDYAIAMFKANGL-PRQKLALVFEKLEQVGEDHKDGPALP-YLSSH 318
           L+ L  SR  E EAD   + +    G  PR  + L ++K+ QVG     G A P +LS+H
Sbjct: 196 LVGLPNSRSHETEADRIGVELAARAGYDPRAAITL-WQKMGQVG-----GSAPPTFLSTH 249

Query: 319 PANEER 324
           P++ +R
Sbjct: 250 PSSADR 255


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 601,993
Number of extensions: 23190
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 3
Length of query: 332
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 250
Effective length of database: 730,157
Effective search space: 182539250
Effective search space used: 182539250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)