BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3309.p
         (593 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095725|ref|YP_001100800.1| glucose dehydrogenase [Herminii...    65   7e-12

>gi|134095725|ref|YP_001100800.1| glucose dehydrogenase
           [Herminiimonas arsenicoxydans]
          Length = 550

 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 124/606 (20%), Positives = 233/606 (38%), Gaps = 99/606 (16%)

Query: 8   VDVVMVGLGWTGSIMGMELTEAGLNVLALE------RGDM--------RDTNTDTPYPKA 53
            D V++G G  GS+   +L +AG +V+ LE      RG++        R ++  +PYP +
Sbjct: 7   ADFVVIGSGIIGSLTAHKLLKAGASVIILEAGPRVTRGELVARFRNSPRRSDWMSPYP-S 65

Query: 54  VDELKYSVRGALFQDLSRETVTIRHTLSDVAVPYRQHGSFLLGDGVGGAGFHWNGMMYRN 113
           +D   + +    +Q +    +         A PY     ++    VGG  +HW    +RN
Sbjct: 66  LDHAPHPI----YQPVKNNYLV-------QAGPYPYEAEYI--RMVGGTSWHWAAHAWRN 112

Query: 114 LPEELEMRSHYEQKYGKKFIPEDMTIQDHGVTYKELEPFYDFSEKVMAVSGKAGNLKGKI 173
           +P + +++S Y                D  ++Y++LEPFY  +E++M VSG         
Sbjct: 113 VPNDFKIKSLYGVGV------------DWPISYEDLEPFYQEAEEIMGVSGAPNT----- 155

Query: 174 VAGGNPLEGERSDEFPNPPLQYQYSASLVEKAMREVGYHPYPAPAANASQPFTNPYGVRI 233
              G+P    R+  FP  P+   Y+     + +RE     Y    +N     ++ Y  R 
Sbjct: 156 ---GSP----RTKAFPMEPVTEPYAM----RRIRERLASTYEV-VSNTVARNSHSYDGRP 203

Query: 234 GPC--NYCG-FCENYGCYMYSKASPQTTILPVLLKRKNFEVRTKAQVIKVNLDAAGKRAT 290
             C  N C   C     Y    A+          ++   ++   A V K+  D  G    
Sbjct: 204 ACCGNNSCQPICPIDAQYHGGIAADSA-------EKAGAKLMANANVYKLEHDDKG-HVV 255

Query: 291 GVTYIDAQGREVEQPADLVLLTAFQTHNVRLLLLSGIGK-PYDPVTGEGVVGKNF----- 344
              Y DA+ +         ++ A    + RLLLLS   K P        +VG+N      
Sbjct: 256 AALYYDAEKKSHRVTGKTFIVAANGIESPRLLLLSASEKFPKGLANHHDMVGRNLMDHPS 315

Query: 345 -AYQYNGGINVIMPKGTQFNPFIGTGAGGVGMDDLNGDQFDHGPLGFIGGASIRHVRYGG 403
            +  ++    + + +G Q    I     G    +    + D   +  + G++        
Sbjct: 316 TSLTFDAEEELWLGRGPQSPSSINAMRDGAFRTEHAPYRLDFTNISRVDGST-------- 367

Query: 404 RPIKQAGTMPGEKVPNWGSEWKASVQDAYQRTLTIGMSGSVMAYRDCYLSLDPTYKDANG 463
           R +   G         +G E++  ++ +    L +     V+   +  ++L  + KD+ G
Sbjct: 368 RSLIAEGV--------YGVEFEKRLRHSAAHELNVKNVLEVLPLPENRITLS-SEKDSMG 418

Query: 464 QPLLRMTLNWKENEGKMLTHIAGEMEKVGQAMNPEKVVKAVRKTGSSWDTRVYQSTHLTG 523
            P  +      +   K       + +++ + M    +  +     S+       + H+ G
Sbjct: 419 IPKPQAHYAIDDYTRKGHERSKEDFKRIAELMGGTNLRFSKEGVFSN-------NQHICG 471

Query: 524 GAIMGTTPKNSVVNKYLQSWDVPNVFVYGACAFPQNMGYNPTGLVTALAYHSAKAIREQY 583
              MG+ P+ SV +++ ++    N+F+      P +   N T    A+A  +A+ I EQ 
Sbjct: 472 TLSMGSDPQTSVCDQWGRAHGHDNLFLASTGVLPTSSTCNSTLNGIAVALRTAQHIIEQM 531

Query: 584 LKNPGP 589
            K+  P
Sbjct: 532 GKSRTP 537


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,256,289
Number of extensions: 57576
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 506
Effective length of database: 713,682
Effective search space: 361123092
Effective search space used: 361123092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)