BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3303.p
         (293 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096009|ref|YP_001101084.1| spermidine/putrescine ABC trans...    55   4e-09

>gi|134096009|ref|YP_001101084.1| spermidine/putrescine ABC
           transporter inner membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 258

 Score = 55.1 bits (131), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 107/223 (47%), Gaps = 13/223 (5%)

Query: 24  WVTIYIPLLIFLFVLLFPFYWMVITAFKPDNELLSQTGNPFWVVAPTLAHFKKLLFDTQY 83
           W+T+   +L++ F L  P   +V+ +F  D+ L     N  WV   TL  ++ L  D + 
Sbjct: 9   WLTLA-AVLVYAF-LYVPLAIVVMYSFN-DSRL-----NAEWV-GFTLDWYRVLFADEEM 59

Query: 84  PAWLLNTVIVSVVSTFASLAASVFAAYAIERLRFQGSKQVGLGIFLAYLIPPSILFIPLA 143
                N++I+++VS+  S      A +A+ R +    + + + +     IP  ++ + L 
Sbjct: 60  LRAAGNSLIIALVSSAVSTVLGTMAGFALHRYKI---RTLQILVLTPIAIPEILVGVSLL 116

Query: 144 AIVFKLGLFDTRWALILTYPTFLIPFCTWLLMGYFRSIPYELEECALIDGATRWEILVKI 203
                L +     +++L +  F + F   ++      +   L E A   GAT W+   ++
Sbjct: 117 IFFVMLNITLGMLSVMLAHIAFSLGFVAIVVRSRLSGMDESLTEAARDCGATPWQAFRRV 176

Query: 204 ILPLAVPGLISAGIFAFTLSWNEFIYALTFISSSEVKTVPVGI 246
            LPL +PG+++  + AFTLS ++F+    F + +  +T+P+ I
Sbjct: 177 TLPLIMPGVVAGALMAFTLSIDDFVITF-FTAGANTQTLPLQI 218


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.329    0.143    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 468,593
Number of extensions: 16683
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 3
Length of query: 293
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 212
Effective length of database: 733,452
Effective search space: 155491824
Effective search space used: 155491824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)