BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3302.p
         (299 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096009|ref|YP_001101084.1| spermidine/putrescine ABC trans...    55   5e-09

>gi|134096009|ref|YP_001101084.1| spermidine/putrescine ABC
           transporter inner membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 258

 Score = 54.7 bits (130), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 30/198 (15%)

Query: 20  AVILLVVFLTYPLGLGIWLGFTDTKIGGEGSFVGLDNFSYLAGDSLAQLSLFNTVFYTVS 79
           A +L+  FL  PL + +   F D+++  E     LD +  L  D     +  N++   + 
Sbjct: 13  AAVLVYAFLYVPLAIVVMYSFNDSRLNAEWVGFTLDWYRVLFADEEMLRAAGNSLIIALV 72

Query: 80  ASILKFMLGLWLAILLNKNVPLKTFFRAIVLLPWIVPTAL---SALAFWWLYDAQFSVIS 136
           +S +  +LG      L++   ++T  + +VL P  +P  L   S L F+ + +    ++S
Sbjct: 73  SSAVSTVLGTMAGFALHRY-KIRTL-QILVLTPIAIPEILVGVSLLIFFVMLNITLGMLS 130

Query: 137 WALHKMGLIDHYIDFLGDPWNARWSTVFANVWRGIPFVAISLLAGLQTISPSLYEAAAID 196
                                     + A++   + FVAI + + L  +  SL EAA   
Sbjct: 131 -------------------------VMLAHIAFSLGFVAIVVRSRLSGMDESLTEAARDC 165

Query: 197 GATPWQQFRHVTLPLLTP 214
           GATPWQ FR VTLPL+ P
Sbjct: 166 GATPWQAFRRVTLPLIMP 183


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.329    0.143    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 587,026
Number of extensions: 24232
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 218
Effective length of database: 733,452
Effective search space: 159892536
Effective search space used: 159892536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)