BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3300.p (361 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 236 2e-63 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 230 6e-62 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 190 8e-50 gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-bin... 135 2e-33 gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 131 6e-32 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 236 bits (601), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 140/366 (38%), Positives = 209/366 (57%), Gaps = 31/366 (8%) Query: 3 SVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEILI 62 S++++ + K+FG+ + V ++ GE T L+GPSGCGK+TLLR++AGLE+ G++L+ Sbjct: 2 SIEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLL 61 Query: 63 GGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTL----AKKDKSFVEERVKKAA 118 G + ++R + VFQ+YAL+ HMTV +N+AF L + + +S ++E+V K Sbjct: 62 DGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVTKLL 121 Query: 119 DILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKE 178 +++ L+ L DRYP QLSGGQRQR+A+ RA+ +P+V L DEP LDAK+R ++R ++ Sbjct: 122 ELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRR 181 Query: 179 LHQRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDHPANLFVAGFIGSPA 238 LH L TSI+VTHDQ EA+ +ADQIV+M G VEQ G P D+Y++PA+ FV GF+G+ Sbjct: 182 LHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYGFLGN-- 239 Query: 239 MNFIPATLRRGAGAAEVEFADGTRVPAPYGSALQGNDGQQVTYGVRPEHLSIG---AAGT 295 L RG V + G AP + Q D + + Y VRP L + + Sbjct: 240 -----VNLFRGRVHEGVLQSSGIAFDAPDHAKTQ--DARGIGY-VRPHDLEVDRYTSGAE 291 Query: 296 GIATQVIVVEPTGADTEVFSRFGQTSLTSIFRERHDFGAGDVIHLVPDHSRTHLFDTASG 355 GI Q+ G L + ER D G++I V + R L G Sbjct: 292 GIVVQLRRAHAIG------------PLAQLELERDD--NGELIEAVISNERFGLLKLKEG 337 Query: 356 QSLAAR 361 ++L R Sbjct: 338 ETLVVR 343 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 230 bits (587), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 124/302 (41%), Positives = 182/302 (60%), Gaps = 15/302 (4%) Query: 1 MASVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEI 60 MA ++IR + ++FG ++ + + I GEF L+GPSGCGK+TLLRM+AG +E G+I Sbjct: 1 MALLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKI 60 Query: 61 LIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKSFVEERVKKAADI 120 L+ G + V P+ R + VFQNYAL+PHMTV N+AF L +A KS ++++V +A + Sbjct: 61 LLDGVDLTGVPPEQRVVRTVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKVDEALED 120 Query: 121 LGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELH 180 + L RYP +LSGGQRQRV++ RA+V P++ L DEPLS LDA+LR QM+ E+ L Sbjct: 121 VRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQ 180 Query: 181 QRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDHPANLFVAGFIGSPAMN 240 + + T +YVTHDQ EA+ ++ +I VM G +EQ P +Y +P + FVA FIG+ N Sbjct: 181 KEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVADFIGT--CN 238 Query: 241 FIPATLRRGAGAAEVEFADGTRVPAPYGSALQG------NDGQQVTYGVRPEHLSIGAAG 294 T+ + AG D + P A++ G + T +RPE + + A Sbjct: 239 LFDGTVTQIAG-------DTMLLDVPGMGAVKALTVAGVQVGSKGTIALRPEKIQVSAEI 291 Query: 295 TG 296 G Sbjct: 292 VG 293 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 190 bits (483), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 106/276 (38%), Positives = 161/276 (58%), Gaps = 16/276 (5%) Query: 17 QIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEILIGGTVVNNVQ----P 72 +I+ + + G+ L+G SGCGK+T+LR +AG E +T G I +GG ++N P Sbjct: 32 EIVHSLSFALQRGQIGCLLGQSGCGKTTVLRAIAGFEPLTEGSITLGGKEISNAHFTATP 91 Query: 73 KDRDIAMVFQNYALYPHMTVRDNMAFSL-TLAKKDKSFVEERVKKAADILGLNQLLDRYP 131 + R I +VFQ+YAL+PH++V DN+ F L LA ++ + R+ ++GL ++P Sbjct: 92 ETRQIGVVFQDYALFPHLSVADNVGFGLRKLAAPER---QARIAALLTLVGLASQGKKFP 148 Query: 132 RQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELHQRLKTTSIYVT 191 +LSGGQ+QRVA+ RA+ P + L DEP SNLD LR ++ +E++++ + + TT++ VT Sbjct: 149 HELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEVGTTAVLVT 208 Query: 192 HDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDHPANLFVAGFIGSPAMNFIPATLRRGAG 251 HDQ EA +ADQI VM+DG++ Q +LY PAN FVA FIG F P + + Sbjct: 209 HDQHEAFAIADQIGVMQDGVIVQWDSAYNLYHRPANRFVADFIGLGV--FTPGIIDQQTQ 266 Query: 252 AAEVEFADGTRVPAPYGSAL---QGNDGQQVTYGVR 284 +E +P +G DGQQV +R Sbjct: 267 NVNIELGS---LPLCHGMETCDPNAPDGQQVDVLLR 299 >gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 271 Score = 135 bits (341), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 122/208 (58%), Gaps = 7/208 (3%) Query: 22 VDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEILIGGTVVNNVQPKDRDIAMVF 81 +++ +A GEF L+G SGCGKSTLL ++AGL + TGG +L G + P+ A+VF Sbjct: 31 INLTVAKGEFITLIGHSGCGKSTLLNLIAGLTQSTGGMLLCGNREIAGPSPER---AVVF 87 Query: 82 QNYALYPHMTVRDN--MAFSLTLAKKD-KSFVEERVKKAADILGLNQLLDRYPRQLSGGQ 138 QN++L P +T +N +A K + K+ + R + A ++GL + P ++SGG Sbjct: 88 QNHSLLPWLTCYENVYLAVERVFGKVEGKAKLRARTRAALSLVGLTHAEQKRPNEISGGM 147 Query: 139 RQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELHQRLKTTSIYVTHDQIEAM 198 +QRV + RA+ +P+V L DEP LDA R ++ E+ ++ +T + VTHD EA+ Sbjct: 148 KQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDELLKIVAATGSTVVMVTHDVDEAV 207 Query: 199 TMADQIVVMRDGLVEQRGRPLDL-YDHP 225 ++D+IV++ +G G L++ HP Sbjct: 208 LLSDKIVMLTNGPSATIGEILEVKLAHP 235 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 131 bits (329), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 76/214 (35%), Positives = 121/214 (56%), Gaps = 6/214 (2%) Query: 4 VQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEILIG 63 ++++ V K +GS Q++ +A G+ V+ GPSG GKSTL++ + GLE G I + Sbjct: 2 IEMKNVSKWYGSFQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSITVD 61 Query: 64 GTVV----NNVQPKDRDIAMVFQNYALYPHMTVRDNMAF-SLTLAKKDKSFVEERVKKAA 118 G V N+ I MVFQN+ L+PH+++R+N+ + + + + ER K Sbjct: 62 GISVGDPKTNLPALRSRIGMVFQNFELFPHLSIRENLTLGQIRVLGRSEEEAAERGLKYL 121 Query: 119 DILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKE 178 D +GL D++P QLSGGQ+QRVA+ RA+ DP LFDEP S LD ++ ++ + Sbjct: 122 DRVGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINEVLDVMVG 181 Query: 179 LHQRLKTTSIYVTHDQIEAMTMADQIVVMRDGLV 212 L Q T + VTH+ A +A++++ M G + Sbjct: 182 LAQD-GMTMMVVTHEMGFARKVANRVIFMDQGTI 214 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 649,171 Number of extensions: 26900 Number of successful extensions: 245 Number of sequences better than 1.0e-08: 47 Number of HSP's gapped: 192 Number of HSP's successfully gapped: 50 Length of query: 361 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 278 Effective length of database: 726,862 Effective search space: 202067636 Effective search space used: 202067636 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)