BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3299.p (319 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094049|ref|YP_001099124.1| putative glyoxylate reductase (... 109 2e-25 gi|134096490|ref|YP_001101565.1| putative phosphoglycerate dehyd... 99 4e-22 gi|134096605|ref|YP_001101680.1| glyoxylate reductase [Herminiim... 91 5e-20 gi|134096589|ref|YP_001101664.1| formate dehydrogenase [Herminii... 84 9e-18 gi|134096368|ref|YP_001101443.1| phosphonate dehydrogenase [Herm... 77 9e-16 >gi|134094049|ref|YP_001099124.1| putative glyoxylate reductase (glycolate reductase) [Herminiimonas arsenicoxydans] Length = 327 Score = 109 bits (273), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 93/330 (28%), Positives = 157/330 (47%), Gaps = 40/330 (12%) Query: 2 KVLITDYDFPDVDLELALYRQAGVEVVTAQCRTEDDVIAASE------GCQGLLVQYA-P 54 K+L+ FPDV L Q EV + Q ED + + +E G G+++ + Sbjct: 4 KILVARATFPDVIERL----QQQFEVESNQ---EDRIFSPAELHEKMQGKDGVIITSSEK 56 Query: 55 VNAKVFAARPEIRIASRYGAGFDTINTADAARYGVWVANSPDYGVGEVATHALAMALDLI 114 ++ +V A P+++ G++ I+ A A + G+ V N+PD A +A + + Sbjct: 57 LSGEVITANPQLKAICNVAVGYNNIDVAAATKAGIMVTNTPDVLNETTADYAWTLLMANA 116 Query: 115 RNITVYDRAVKAGQW------HYTTAGIIPRASELTLGIIGLGRIGKRMAHISRNLFKRV 168 R + + ++AG+W + A + TLGI+G+GRIG+ +A S +V Sbjct: 117 RRTSESEHYLRAGKWKNWRFDQFLGADV----HGATLGILGMGRIGQAIARRSMGFDMQV 172 Query: 169 IAYDPYIIDGDFPAYVER---VGREDLFRQAHVVSLHTPLNDETRNMIDASLLALLPPQS 225 I ++ + D A+ V +E+L R A + L P +++T ++I A+ LAL+ P + Sbjct: 173 IYHNRSRLTPDQEAHANNARYVSKEELLRTADHLILVLPYSEQTHHIIGAAELALMKPTA 232 Query: 226 YLVNSARGGLIQIDDLLAALENGQLKGAALDVLPVEPPTTSAAIVQHP------RVLLSP 279 LVN ARGG++ L+AAL ++ A LDV EP HP V+L+P Sbjct: 233 TLVNIARGGIVDDVALIAALREHRIASAGLDVYENEPAL-------HPDFLTLSNVVLTP 285 Query: 280 HAAFFSDVAARELRRKAAQNLIDWDRNGRP 309 H S+ R + A+ N++ RP Sbjct: 286 HIGSASEKTRRAMSDCASLNMVAALSGQRP 315 >gi|134096490|ref|YP_001101565.1| putative phosphoglycerate dehydrogenase(partial) [Herminiimonas arsenicoxydans] Length = 317 Score = 98.6 bits (244), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 114/231 (49%), Gaps = 3/231 (1%) Query: 55 VNAKVFAARPEIRIASRYGAGFDTINTADAARYGVWVANSPDYGVGEVATHALAMALDLI 114 V+ + A P++R+ R G G D I+ G+ V + G VA + + A+ L+ Sbjct: 62 VDIALLDAAPKLRVVGRLGVGLDNIDVDACKARGIDVFPATGANAGAVAEYVIGTAMALL 121 Query: 115 RNITVYDRAVKAGQWHYTTAGIIPRASELTLGIIGLGRIGKRMAHISRNLFKRVIAYDPY 174 R AG W T + TLG+IG G IG+ A +++ L VIA+DP Sbjct: 122 REAYTRSAETAAGTWPRTALSNGREIAGKTLGLIGFGGIGQLTARLAQALGVTVIAHDPL 181 Query: 175 II-DGDF--PAYVERVGREDLFRQAHVVSLHTPLNDETRNMIDASLLALLPPQSYLVNSA 231 + D A V ++ QA +VSLH PL TRN+I A LA + P + L+N++ Sbjct: 182 LAPDAAIWQQAGVACKQLHEVLEQADIVSLHIPLTTNTRNLIGADALARMKPDAVLINTS 241 Query: 232 RGGLIQIDDLLAALENGQLKGAALDVLPVEPPTTSAAIVQHPRVLLSPHAA 282 RG ++ L AL + L GAA+DV EP A+ PRV+L+PH A Sbjct: 242 RGEIVDEAALAQALHSANLGGAAIDVFAQEPLAPGNALANAPRVILTPHIA 292 >gi|134096605|ref|YP_001101680.1| glyoxylate reductase [Herminiimonas arsenicoxydans] Length = 327 Score = 91.3 bits (225), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 109/224 (48%), Gaps = 22/224 (9%) Query: 104 THALAMALDLIRNITVYDRAVKAGQWH-------YTTAGIIPRASELTLGIIGLGRIGKR 156 T AL MA +R + Y +K G W + T G + + TLGI G GRIG+ Sbjct: 109 TWALIMAA--MRKLPQYVGNLKDGLWQIASLSSAHNTLGAVLKGR--TLGIWGYGRIGRM 164 Query: 157 MAHISRNLFKRVIAYD------PYIIDGDFPAYVERVGREDLFRQAHVVSLHTPLNDETR 210 +A + +V+ + + DG Y RE+ F A V+SLH LND TR Sbjct: 165 VAGYGQAFGMKVLVWGRDASRAAAVQDG----YQAASSREEFFSTADVLSLHLRLNDATR 220 Query: 211 NMIDASLLALLPPQSYLVNSARGGLIQIDDLLAALENGQLKGAALDVLPVEPPTTSAAIV 270 ++ AS LA + + VN++R L+ D L ALE G+ AALDV EP +++++ Sbjct: 221 GIVTASDLAHMKSSALFVNTSRAELVASDALQTALEQGRPGYAALDVFESEPLAPTSSLL 280 Query: 271 QHPRVLLSPHAAFFSDVAARELRRKAAQNLIDWDRNGRPSYVVV 314 + VL SPH + + R A +N++ + NG P V++ Sbjct: 281 RMENVLASPHLGYVEKDSYELYFRSAFENIVAF-ANGAPKNVLL 323 >gi|134096589|ref|YP_001101664.1| formate dehydrogenase [Herminiimonas arsenicoxydans] Length = 400 Score = 84.0 bits (206), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 75/277 (27%), Positives = 127/277 (45%), Gaps = 20/277 (7%) Query: 53 APVNAKVFAARPEIRIASRYGAGFDTINTADAARYGVWVANSPDYGVGEVATHALAMALD 112 A + A+ A ++++ G G D + A ++ + VA VA H L M L Sbjct: 102 AYMTAERIAKAKKLKMIVTAGIGSDHTDLEAANKHNITVAEVTYCNSHSVAEHVLMMILS 161 Query: 113 LIRNITVYDRAVKAGQWHYTTAGIIPRASEL---TLGIIGLGRIGKRMAHISRNLFKRVI 169 +RN + V G W+ A + R+ +L ++G + GRIG R+ + ++ Sbjct: 162 QVRNYIPSYKQVIDGGWN--IADCVSRSYDLEAMSVGTVAAGRIGLRVLRLLHPFDVKLH 219 Query: 170 AYDPYIIDGDFPAYVER-------VGREDLFRQAHVVSLHTPLNDETRNMIDASLLALLP 222 D + P VE+ E L + VV+L+ PL+ ET +MI+ L Sbjct: 220 YMDRH----RLPTAVEKELNLTYHSTLESLTKVCDVVTLNCPLHPETEHMINEKTLKNFK 275 Query: 223 PQSYLVNSARGGLIQIDDLLAALENGQLKGAALDVLPVEPPTTSAAIVQHPRVLLSPHAA 282 +Y++N+ARG L D ++AAL++GQL G A DV +P + P ++PH + Sbjct: 276 RGAYIINTARGKLCDRDAIVAALKSGQLAGYAGDVWFPQPAPKNHPWRTMPHHGMTPHIS 335 Query: 283 FFSDVAARELRRKAAQNLIDWDRNGRP---SYVVVQG 316 S + A+ + +++ GRP Y++VQG Sbjct: 336 GTS-LTAQTRYAAGTREILECYFEGRPIRDEYLIVQG 371 >gi|134096368|ref|YP_001101443.1| phosphonate dehydrogenase [Herminiimonas arsenicoxydans] Length = 336 Score = 77.4 bits (189), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 79/325 (24%), Positives = 148/325 (45%), Gaps = 23/325 (7%) Query: 2 KVLITDYDFPDVDLELALYRQAGVEVVTAQCRTEDDVIAASEGCQGLLVQYAP--VNAKV 59 K++IT + P++ +E+ V T + ++++ S+ ++ + P V+ Sbjct: 4 KIVITHWVHPEI-VEMLSSVAEVVTNDTLETLPREELLRRSKDADAVMA-FMPDSVDDSF 61 Query: 60 FAARPEIRIASRYGAGFDTINTADAARYGVWVANSPDYGVGEVATHALAMALDLIRNITV 119 AA P+++I G+D + + GVW PD A + + L L R++ Sbjct: 62 LAACPKLKIVFAALKGYDNFDVDACTKRGVWFGIVPDLLTVPTAELTVGLLLGLTRHVMA 121 Query: 120 YDRAVKAGQWHYTTAGIIPRA-----SELTLGIIGLGRIGKRMAHISRNLFKRVIAYDPY 174 D V++G +H G P+ + T+GIIG+GR+GK +A + D Sbjct: 122 GDDHVRSGTFH----GWRPKLYGAGLAGSTIGIIGMGRVGKAIAKRLSGFEMNAVYCDSV 177 Query: 175 IIDG-DFPAYVER-VGREDLFRQAHVVSLHTPLNDETRNMIDASLLALLPPQSYLVNSAR 232 ++ D A+ R V ++L + V P+ +T ++IDA ++ + SYL+N++R Sbjct: 178 PLNPVDEQAWNARQVSFDELLTCSDFVVPMLPMTSDTFHLIDAHAISKMRRGSYLLNTSR 237 Query: 233 GGLIQIDDLLAALENGQLKGAALDVLPVE-------PPTTSAAIVQH-PRVLLSPHAAFF 284 G ++ + ++ AL G L G A DV +E P T A++ + + L +PH Sbjct: 238 GSVVDENAVVEALNQGHLAGYAADVFEMEEWARPDRPLTVPQALLNNRTQTLFTPHVGSG 297 Query: 285 SDVAARELRRKAAQNLIDWDRNGRP 309 E+ R +A +++ RP Sbjct: 298 VKKVRLEIERYSAHSILQALAGQRP 322 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.137 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 599,176 Number of extensions: 23602 Number of successful extensions: 91 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 87 Number of HSP's successfully gapped: 5 Length of query: 319 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 237 Effective length of database: 730,157 Effective search space: 173047209 Effective search space used: 173047209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)