BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3298.p
         (357 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096491|ref|YP_001101566.1| putative malate/L-lactate dehyd...    75   5e-15

>gi|134096491|ref|YP_001101566.1| putative malate/L-lactate
           dehydrogenase ((R)-2-hydroxyacid dehydrogenase)
           [Herminiimonas arsenicoxydans]
          Length = 336

 Score = 75.1 bits (183), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 131/315 (41%), Gaps = 37/315 (11%)

Query: 48  GHDTHGLALLAPYVKELEKGTMTRTGEPEVLSERAAALAWDGRRLPGPWLVHRGIDALIP 107
           G  +HG++ +  Y   L  G  + T  P+++  +  A   D +           I     
Sbjct: 41  GLASHGVSRVPQYTTFLRNGRSSTTAIPKIVHSKGGACLIDAQSGMAYEACALAIQTATA 100

Query: 108 KARDYGTASLTIHHSHHIACLAAYLLRATQEGFMMILASSDPAVQSVAPFGGTQAVFTPN 167
           +AR++G + + + +S+H    A +L    + G + +  S+ PA  ++  +GG   +F  N
Sbjct: 101 RAREFGISCVGVTNSNHFGAAAVHLEPLGRAGLVGLAFSNSPA--AMPAWGGKTPLFGTN 158

Query: 168 PIAAGIP-TSGTPFLVDISASITTNGMSNRLHKAGQQFEEEWLIDGQGHPSRDPAVLTAT 226
           PIAA  P     P ++D++ S    G      K G+     W +D  G P+ D     A 
Sbjct: 159 PIAAIFPRRDAEPLVIDLALSEAARGKIMLAAKDGKPIPLGWAVDKDGKPTTDAKAALA- 217

Query: 227 PPGTILPLGGLSAGHKGFGLALLIEALTGGLSGFGRADPPAGWG-----ATVFLSLYDPS 281
             G++LP+GG+        + LL  ALTG   GF      +  G       +FL++ DP 
Sbjct: 218 --GSMLPVGGVKGAMIALTVELLAIALTGSAFGFEADSFFSDEGNQPRLGQLFLAI-DPG 274

Query: 282 AFGGEQDFKRQMDHIAQACRHNAPRPGVGQVRMPGDRALQRRAEQLEQGVALHPTIAPML 341
           A  G   +  +++ +      +        VR+PG+R           G+A+        
Sbjct: 275 ALAGSDVYFSRIETLLGMMLQD------DGVRLPGER---------RHGLAVK------- 312

Query: 342 REAAASHGLAFPAAL 356
              AA HG+  P AL
Sbjct: 313 ---AAQHGIEIPDAL 324


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 778,338
Number of extensions: 35862
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 274
Effective length of database: 726,862
Effective search space: 199160188
Effective search space used: 199160188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)