BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3297.p
         (262 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095895|ref|YP_001100970.1| GntR family transcriptional reg...    72   2e-14

>gi|134095895|ref|YP_001100970.1| GntR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 247

 Score = 72.0 bits (175), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 120/236 (50%), Gaps = 17/236 (7%)

Query: 6   IEPQRLYRQISDQLRKLIVDGEFAVGSRLPSERDLALQLGVSRPSLREALIALEVEGHIE 65
           +E QRL+  + + L+ LI++G  A G +L +ER++  +LG+SR  LREA+  L  EG I+
Sbjct: 19  VERQRLHDAVVEHLQNLIIEGVLAPGMKL-NEREVCERLGISRTPLREAMKVLASEGLID 77

Query: 66  VRMGSGIYVCPPVQRERRSDLSGEEGPLELIRAREMIEGEVAYAAAQHGSKQQIAAVEEA 125
           +    G +V      E            E++   E + GE+A   A+  S  +IA ++  
Sbjct: 78  IAPNRGAFVSKMNDNEIWE-------AFEMMSGLEALSGELA---AERISPAEIADIKVL 127

Query: 126 Y-ALMMAHAEAGIDPLEA-DRLFHIRLAEATGNSVLVGLVTQLFDARLGPLFERLHSHFD 183
           + A+++  A+  +    + ++  H ++ EA  NS+L  +   + + RL  L  R  S+F 
Sbjct: 128 HEAMLVCRAQNDLPGYYSRNQTIHNKINEAARNSMLRQIYLSI-NRRLLAL--RFKSNFQ 184

Query: 184 GTRVWQEAIEEHGLIMQALRERNAEQARAAMRRHMDIAFTRYSANLIRAYGHRQQG 239
             + W  AI EH  +++AL  R+ ++  A +R+H+        A+L  A GH   G
Sbjct: 185 EAK-WDRAIHEHDEMIKALESRDGKRLAAILRQHLLDKRDSVMADLREAAGHAASG 239


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 453,189
Number of extensions: 18176
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 182
Effective length of database: 736,747
Effective search space: 134087954
Effective search space used: 134087954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)